BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN21351 (UTR included)
(2746 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01056A2B09 276 2e-73
BF14_3112_C1 84 1e-15
>BF01056A2B09
Length = 668
Score = 276 bits (139), Expect = 2e-73
Identities = 298/350 (85%), Gaps = 2/350 (0%)
Strand = Plus / Plus
Query: 2142 gaagatgtgactaaaaccgacttggagaaaatgttaaattcgcagcccattgaagaagag 2201
|||||| ||||| |||||||| ||||| | ||||||||| |||||| |||||||||||
Sbjct: 289 gaagatttgactgaaaccgacgtggaggggaggttaaattcacagcccgttgaagaagag 348
Query: 2202 acttcaacaagcactgggaatgtgaaatt--cctcgataaatcatagtggaggtttaaga 2259
||| ||||||||| || ||||||| ||| | || ||||| ||||| ||| || |||
Sbjct: 349 gctttaacaagcacaggaaatgtgacatttacactgaaaaatcttagtgaaggattgaga 408
Query: 2260 atggcaaatgagctttgcgatttctttatgaacattgatccatatatagaactaagtaat 2319
||||||||||||||||||||||||||| |||||||||||| || |||||||| |||||||
Sbjct: 409 atggcaaatgagctttgcgatttctttgtgaacattgatctatctatagaacaaagtaat 468
Query: 2320 tttaagagccaaattgctaatgcgactgctgaatatcagtctgaattgaaggagctatta 2379
||||||| ||||| | |||||||||| |||| |||||||||||| |||||||||||||
Sbjct: 469 gttaagaggcaaatggttaatgcgactcctgataatcagtctgaatggaaggagctatta 528
Query: 2380 aaaactgccaagcaagagaaaataacaaaattcttcaaatcattgtctaagaatgaggat 2439
||| ||||||||||||||||| ||| |||||| ||| ||||| ||||||||||||||
Sbjct: 529 gaaagtgccaagcaagagaaaacaactaaattcccaaaaccattgcctaagaatgaggat 588
Query: 2440 aatgattaataaaaatgttcttaaactacaatgaaattgattttcttata 2489
||| ||||| ||||||||| ||||| |||| |||||||||||||||||
Sbjct: 589 aatagttaatcaaaatgttcaaaaacttcaataaaattgattttcttata 638
>BF14_3112_C1
Length = 724
Score = 83.8 bits (42), Expect = 1e-15
Identities = 156/194 (80%)
Strand = Plus / Plus
Query: 1107 cgatgtttagagttaccgcttgaaaaagaactttgtgttgatgagcagatggttcctttc 1166
||||| ||||| ||||||| ||||||||| | ||||| ||||| || || ||||||||
Sbjct: 84 cgatgcttagaaataccgctagaaaaagaattgtgtgtcgatgaacaaatagttcctttt 143
Query: 1167 actgggagacatgttgccaaacaatacataaaaggtaaaccttgtccatggggactgaag 1226
|| |||| |||| ||| || || ||||| ||||| |||||||||||||||||| |||||
Sbjct: 144 acagggaaacattctgctaagcagtacatcaaaggaaaaccttgtccatggggaatgaag 203
Query: 1227 atattttttttatgtggtaaacatgggcaagcctatgattttctactttatcaaagctct 1286
| || ||||| ||||| ||| |||| | |||||||| ||| | ||||||||| |||
Sbjct: 204 cttttctttttgtgtgggaaaaatggccgtgcctatgactttattatttatcaaaattct 263
Query: 1287 agtccagaacttga 1300
| ||||||| ||||
Sbjct: 264 attccagaatttga 277
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 315,180
Number of extensions: 5652
Number of successful extensions: 5652
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 5652
Number of HSP's successfully gapped: 2
Length of query: 2746
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2729
Effective length of database: 8,119,229
Effective search space: 22157375941
Effective search space used: 22157375941
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)