BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN21372 (UTR included)
(1603 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01057B2B01 153 1e-36
BF01038B2F08 117 6e-26
BF01039A2C03 72 3e-12
>BF01057B2B01
Length = 555
Score = 153 bits (77), Expect = 1e-36
Identities = 153/176 (86%), Gaps = 3/176 (1%)
Strand = Plus / Plus
Query: 85 tcttacaagatggctgaagcctgtatttatagttttcaaattaaagttgatacttatggg 144
|||||||| |||||||||||| || |||||||||||||||| |||| ||||||| | |
Sbjct: 13 tcttacaatatggctgaagcccgtgtttatagttttcaaatacaagtagatacttgtatg 72
Query: 145 ttgccataa--aaattacaatggttcagtgttacaattaattacaatcagtcataaaaac 202
||||||| | ||| |||||||||||||||||| || ||||||||||||||||| ||||
Sbjct: 73 ttgccattacaaaactacaatggttcagtgttataagtaattacaatcagtcattaaaat 132
Query: 203 tattctaaggattatagtatattataattagtacggcacagaaggcgccacttgta 258
||| |||||||||||||| ||||| ||||||||||| |||| |||||||||||||
Sbjct: 133 aattgtaaggattatagta-attatgattagtacggcgcagatggcgccacttgta 187
>BF01038B2F08
Length = 786
Score = 117 bits (59), Expect = 6e-26
Identities = 98/111 (88%)
Strand = Plus / Plus
Query: 151 taaaaattacaatggttcagtgttacaattaattacaatcagtcataaaaactattctaa 210
|||||||||||||||| |||| ||| ||||||| |||||||||| ||| ||| |||||||
Sbjct: 626 taaaaattacaatggtccagtattataattaataacaatcagtcgtaagaacaattctaa 685
Query: 211 ggattatagtatattataattagtacggcacagaaggcgccacttgtaaca 261
|||||||||||| |||||||||| | |||| || ||||||||||||||||
Sbjct: 686 ggattatagtatgttataattagctcagcacggagggcgccacttgtaaca 736
>BF01039A2C03
Length = 818
Score = 71.9 bits (36), Expect = 3e-12
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 57 ttaatgttcagcgttacttccagtaatatcttacaagatggctgaagcctgtatttatag 116
|||||||||||| || ||||||||||| || ||||| |||||| | | | ||||||||||
Sbjct: 274 ttaatgttcagcatttcttccagtaatgtcctacaaaatggctaaggtcagtatttatag 215
Query: 117 ttttcaaattaaagttgatactta 140
||||||||| ||||| |||||||
Sbjct: 214 ttttcaaatacaagttcatactta 191
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 205,832
Number of extensions: 4679
Number of successful extensions: 4679
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4677
Number of HSP's successfully gapped: 3
Length of query: 1603
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1586
Effective length of database: 8,119,229
Effective search space: 12877097194
Effective search space used: 12877097194
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)