BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN21590 (UTR included)
(2098 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01013A2C09 228 3e-59
>BF01013A2C09
Length = 830
Score = 228 bits (115), Expect = 3e-59
Identities = 125/127 (98%), Gaps = 1/127 (0%)
Strand = Plus / Plus
Query: 1972 gaatgctagcttaaaaataaaaaggtaagtatatatgcgagtcaggtccggaaatatagt 2031
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 gaatgctagcttaaaaataaaaaggtaagtatatatgtgagtcaggtccggaaatatagt 60
Query: 2032 attatacaaatgtgtactatatgtgaacattttgaaatctttattgttctaaacttgtac 2091
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attatac-aatgtgtactatatgtgaacattttgaaatctttattgttctaaacttgtac 119
Query: 2092 atattat 2098
|||||||
Sbjct: 120 atattat 126
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 301,070
Number of extensions: 18582
Number of successful extensions: 18582
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 18581
Number of HSP's successfully gapped: 1
Length of query: 2098
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2081
Effective length of database: 8,119,229
Effective search space: 16896115549
Effective search space used: 16896115549
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)