BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN21751 (UTR included)
(1957 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_729_C3 107 7e-23
BF01044B2E12 82 4e-15
BF01012A1B09 76 2e-13
BF01012A2C11 68 6e-11
BF14_23_C1 68 6e-11
>BF14_729_C3
Length = 2041
Score = 107 bits (54), Expect = 7e-23
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 1807 ctagtattattcggatatactacgcggattttattatttaaaaactacataatc 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1689 ctagtattattcggatatactacgcggattttattatttaaaaactacataatc 1636
Score = 71.9 bits (36), Expect = 4e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1880 tcacggttgctgcaaagtaaccgaaacgtcgggatt 1915
||||||||||||||||||||||||||||||||||||
Sbjct: 1604 tcacggttgctgcaaagtaaccgaaacgtcgggatt 1639
>BF01044B2E12
Length = 823
Score = 81.8 bits (41), Expect = 4e-15
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 1803 gaaactagtattattcggatatactacgcggattttattatttaaaaactacataatc 1860
|||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 76 gaaactagtatttttcggatttactacgcggattttattatttaannnctacataatc 19
>BF01012A1B09
Length = 841
Score = 75.8 bits (38), Expect = 2e-13
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 1803 gaaactagtattattcggatatactacgcggattttattatttaaaaactacataatc 1860
||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 744 gaaactaatatatttcggatacactacgcggattttattattttaaaactacataatc 801
>BF01012A2C11
Length = 780
Score = 67.9 bits (34), Expect = 6e-11
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 1880 tcacggttgctgcaaagtaaccgaaacgtcggga 1913
||||||||||||||||||||||||||||||||||
Sbjct: 288 tcacggttgctgcaaagtaaccgaaacgtcggga 255
>BF14_23_C1
Length = 1573
Score = 67.9 bits (34), Expect = 6e-11
Identities = 52/58 (89%)
Strand = Plus / Minus
Query: 1803 gaaactagtattattcggatatactacgcggattttattatttaaaaactacataatc 1860
||||||||| ||| ||||| | ||||||||| ||||||| ||||||||||||||||||
Sbjct: 442 gaaactagttttagtcggaaacactacgcggtttttattgtttaaaaactacataatc 385
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 187,650
Number of extensions: 3421
Number of successful extensions: 3421
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3421
Number of HSP's successfully gapped: 6
Length of query: 1957
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1940
Effective length of database: 8,119,229
Effective search space: 15751304260
Effective search space used: 15751304260
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)