BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN21877 (UTR included)
(1375 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01031B2E06 105 2e-22
BF14_335_C2 90 1e-17
BF01037A2H12 70 1e-11
>BF01031B2E06
Length = 707
Score = 105 bits (53), Expect = 2e-22
Identities = 90/101 (89%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 609 gaaactaacatccccaaagaccatgttatcaagttcaacaagtattacga-gctcactaa 667
||||| ||||||||||||||||||| |||||| |||| ||||||||||| |||||||||
Sbjct: 436 gaaaccaacatccccaaagaccatgccatcaagatcaataagtattacgaagctcactaa 495
Query: 668 gaaaatgttcgttgtaaatttgtacgcggtagaagtaggag 708
||| | |||||| | ||||||||||||||||||||| ||||
Sbjct: 496 gaataggttcgtggcaaatttgtacgcggtagaagtgggag 536
>BF14_335_C2
Length = 1827
Score = 89.7 bits (45), Expect = 1e-17
Identities = 97/113 (85%), Gaps = 1/113 (0%)
Strand = Plus / Minus
Query: 597 acggttccttgggaaactaacatccccaaagaccatgttatcaagttcaacaagtattac 656
|||||||||||| | || |||||||||||| |||||| |||||| |||||||||||||
Sbjct: 1227 acggttccttggaagaccaacatccccaaaaaccatgccatcaaggtcaacaagtattat 1168
Query: 657 gagctcactaagaaaatgttcgttgt-aaatttgtacgcggtagaagtaggag 708
|||||||||| ||| | |||||| | ||||||||||| ||||||||| ||||
Sbjct: 1167 gagctcactaggaataggttcgtaataaaatttgtacgtggtagaagtgggag 1115
>BF01037A2H12
Length = 773
Score = 69.9 bits (35), Expect = 1e-11
Identities = 92/109 (84%), Gaps = 4/109 (3%)
Strand = Plus / Plus
Query: 679 ttgtaaatttgtacgcggtagaagtaggagggagaggttta---gccaaatctctcaaca 735
|||| |||||||||| |||| ||||||||| ||||||| || |||||||||||| |||
Sbjct: 666 ttgtgaatttgtacgaggtaaaagtaggagcgagaggtataaaagccaaatctctcgaca 725
Query: 736 accggctaaaagatctaggcctgtcaagaactaatatcagttcattctt 784
||| ||||||||| || | | || ||||| |||| ||||||||||||||
Sbjct: 726 acctgctaaaaga-cttgccttgccaagagctaacatcagttcattctt 773
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 166,300
Number of extensions: 3408
Number of successful extensions: 3408
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 3405
Number of HSP's successfully gapped: 3
Length of query: 1375
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1358
Effective length of database: 8,119,229
Effective search space: 11025912982
Effective search space used: 11025912982
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)