BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN21879 (UTR included)
(3052 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01053A2B01 1469 0.0
>BF01053A2B01
Length = 745
Score = 1469 bits (741), Expect = 0.0
Identities = 744/745 (99%)
Strand = Plus / Plus
Query: 1694 actgtccgacttcgaggctatgatgcagaggaagagagaggagcggcgaggaagacgcag 1753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actgtccgacttcgaggctatgatgcagaggaagagagaggagcggcgaggaagacgcag 60
Query: 1754 gaggagagacatcgagatgatcaacgacaacgacgacctcatagcggcgctcctcgcgga 1813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaggagagacatcgagatgatcaacgacaacgacgacctcatagcggcgctcctcgcgga 120
Query: 1814 catgcggcgggcggcggacgaggaccgcgagctgaaccgaaggaatcagcccgccgtgag 1873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catgcggcgggcggcggacgaggaccgcgagctgaaccgaaggaatcagcccgccgtgag 180
Query: 1874 gaaggtgtccatgctgaagagagccgtgtcgcagctcatcaagagagacctgcagctggc 1933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaaggtgtccatgctgaagagagccgtgtcgcagctcatcaagagagacctgcagctggc 240
Query: 1934 tttcctggaggccaacgtgctcaacgtgctgtgcgactggctggcgccgatgcccaatag 1993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttcctggaggccaacgtgctcaacgtgctgtgcgactggctggcgccgatgcccaatag 300
Query: 1994 agcgctgccctgtctgctcatcagggagagcgtgctgaagctgctcatggatttcccagc 2053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agcgctgccctgtctgctcatcagggagagcgtgctgaagctgctcatggatttcccagc 360
Query: 2054 catcgacaagtctcttctcaagcagtcggggatcggcaaagcggtgatgtacctctacaa 2113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catcgacaagtctcttctcaagcagtcggggatcggcaaagcggtgatgtacctctacaa 420
Query: 2114 gcatcccaaggaaacgaaagctaacaaagagcgtgccggccgcctcatatccgagtgggc 2173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcatcccaaggaaacgaaagctaacaaagagcgtgccggccgcctcatatccgagtgggc 480
Query: 2174 ccgaccgatattcaacttgtccacagacttcagagctatgacacgagaggagcgacaggc 2233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccgaccgatattcaacttgtccacagacttcagagctatgacacgagaggagcgacaggc 540
Query: 2234 gcgagacgaggccatgtcggggaataggaggagggaggaagccccgcccagcaagagaac 2293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gcgagacgaggccatgtcggggaataggaggagggaggaagccccgcccagcaagagaac 600
Query: 2294 ccgcacagaggaaccggagagagctgtccgtcccggtgagccgggctgggtgtcccgggc 2353
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 601 ccgcacagaggaaccggagagagcggtccgtcccggtgagccgggctgggtgtcccgggc 660
Query: 2354 gagggttcccgcgccctccaacaaggactacgtggtgaggcccaagtctacctgcgacct 2413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gagggttcccgcgccctccaacaaggactacgtggtgaggcccaagtctacctgcgacct 720
Query: 2414 ggacatgtcccgggtcagcaagaag 2438
|||||||||||||||||||||||||
Sbjct: 721 ggacatgtcccgggtcagcaagaag 745
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 286,594
Number of extensions: 5308
Number of successful extensions: 5308
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 5308
Number of HSP's successfully gapped: 1
Length of query: 3052
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3034
Effective length of database: 8,109,745
Effective search space: 24604966330
Effective search space used: 24604966330
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)