BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN21883 (UTR included)
(1672 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01047B2H03 163 1e-39
BF01060B1D11 90 1e-17
BF01031B2E06 68 5e-11
>BF01047B2H03
Length = 758
Score = 163 bits (82), Expect = 1e-39
Identities = 297/366 (81%), Gaps = 2/366 (0%)
Strand = Plus / Minus
Query: 254 aacttgctaaatctgcgaggaggcagttggaactgctaagcatttgctggtgggatgtag 313
||||||||| |||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct: 365 aacttgctatatctgcgaggaggcagttggaattgctgagcatttgctgatgggatgtag 306
Query: 314 ggtactcttggatagcggtcaatactggc-gtcgtcatgatatggtttttgaaatcatac 372
| ||||| |||||||||||||||||| | ||| ||||||| |||||| | ||||||
Sbjct: 305 gctactcctggatagcggtcaatactaccggtctccatgatagggttttaaatttcatac 246
Query: 373 gtgaagcagttagactttcgatagtcagagcgcaaaaagaaataaagccaaacaagctat 432
|||||| ||||| ||| | |||||| ||| |||||||||||| ||||| || ||
Sbjct: 245 atgaagcggttagtattttggtagtcattgcggaaaaagaaataaccacaaacgggcgat 186
Query: 433 cgacacgttttgtaagagaaggcactagggctacaaaatctaacgtcaaatcttactcta 492
| ||||||| ||||||| || |||||||| ||| || ||| |||| |||||||||
Sbjct: 185 taattggttttgtgagagaagacattagggctataaagtcaaacatcaagccttactcta 126
Query: 493 tcattaaaatggcttcggattggactatagtgatagattcgtatgagaaacaatataaaa 552
|| ||||| || ||||||||| |||||| | || ||| |||||| | ||| ||| ||||
Sbjct: 125 tccttaaagcggtttcggattgcactataatcatggatacgtatggggaacgatacaaaa 66
Query: 553 tcccagaggatatttgtgcgacggcttccaaacccgacatattttttatattagcgaatt 612
|||| ||| ||| ||||| | ||| ||||| ||| |||||||||| |||||| |||||||
Sbjct: 65 tccccgagcata-ttgtgtgtcggtttccagaccagacatattttatatattcgcgaatt 7
Query: 613 tcaaag 618
| ||||
Sbjct: 6 ttaaag 1
>BF01060B1D11
Length = 799
Score = 89.7 bits (45), Expect = 1e-17
Identities = 63/69 (91%)
Strand = Plus / Minus
Query: 251 aaaaacttgctaaatctgcgaggaggcagttggaactgctaagcatttgctggtgggatg 310
|||||||||||| || |||||| |||||||||||| |||||||||||||||| |||||||
Sbjct: 187 aaaaacttgctatatttgcgagaaggcagttggaattgctaagcatttgctgatgggatg 128
Query: 311 tagggtact 319
|||| ||||
Sbjct: 127 taggctact 119
>BF01031B2E06
Length = 707
Score = 67.9 bits (34), Expect = 5e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 651 gaaaccaacatccccaaggacaatgccatcaaggtcactaagtattacga 700
||||||||||||||||| ||| ||||||||||| ||| ||||||||||||
Sbjct: 436 gaaaccaacatccccaaagaccatgccatcaagatcaataagtattacga 485
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 207,981
Number of extensions: 4390
Number of successful extensions: 4390
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4390
Number of HSP's successfully gapped: 4
Length of query: 1672
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1655
Effective length of database: 8,119,229
Effective search space: 13437323995
Effective search space used: 13437323995
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)