BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN21933 (UTR included)
(3397 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01054A2E10 1445 0.0
>BF01054A2E10
Length = 756
Score = 1445 bits (729), Expect = 0.0
Identities = 729/729 (100%)
Strand = Plus / Plus
Query: 1716 caatacaacaaccagcaacacaactacgaccagaacttcaattcatctcatcagtacggc 1775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caatacaacaaccagcaacacaactacgaccagaacttcaattcatctcatcagtacggc 60
Query: 1776 agcgagagcggcgacaactatccatcaaacaacagcgtcagcggcaacgagaatagttac 1835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agcgagagcggcgacaactatccatcaaacaacagcgtcagcggcaacgagaatagttac 120
Query: 1836 gacagtcagacattcgaccaattgacgaataagccggatatagaagagccggatttatca 1895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gacagtcagacattcgaccaattgacgaataagccggatatagaagagccggatttatca 180
Query: 1896 aatctgccgaaaatcaatttctctcaacccccgcctggattcaagcctcaagagaacagt 1955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatctgccgaaaatcaatttctctcaacccccgcctggattcaagcctcaagagaacagt 240
Query: 1956 acaataataccgtttcagaacggtctgccagatctaagcaaacccccgcccggcttcccg 2015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acaataataccgtttcagaacggtctgccagatctaagcaaacccccgcccggcttcccg 300
Query: 2016 ccgttcccagaaattaacaacgaagacctgatgccctccgtaccttactttgagttacca 2075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccgttcccagaaattaacaacgaagacctgatgccctccgtaccttactttgagttacca 360
Query: 2076 gcggggctgatggtaccactcattatgttagaagacgacagataccgccccctggacccg 2135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcggggctgatggtaccactcattatgttagaagacgacagataccgccccctggacccg 420
Query: 2136 gccgccatccgtctaccgccgcccgcgccgcccaacgagcgactgctggccgccgtagac 2195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gccgccatccgtctaccgccgcccgcgccgcccaacgagcgactgctggccgccgtagac 480
Query: 2196 gctttctacgcttcaccaaaccacgaacgacctagagataatgaaggctgggagaaatta 2255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gctttctacgcttcaccaaaccacgaacgacctagagataatgaaggctgggagaaatta 540
Query: 2256 ggtttatatgaatactacaaagccaaaaactcaagtagaaagaaaaaagaagatgaaatc 2315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggtttatatgaatactacaaagccaaaaactcaagtagaaagaaaaaagaagatgaaatc 600
Query: 2316 gctcaaggtttacgggaaaagtcaaaatcaccaagtcccatacctaaagacctacagaag 2375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gctcaaggtttacgggaaaagtcaaaatcaccaagtcccatacctaaagacctacagaag 660
Query: 2376 cagcccacgccgcccgggaggagatataggtcattaagtagaacaccagaaaaaacccag 2435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 cagcccacgccgcccgggaggagatataggtcattaagtagaacaccagaaaaaacccag 720
Query: 2436 tcaccgcag 2444
|||||||||
Sbjct: 721 tcaccgcag 729
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 362,100
Number of extensions: 7544
Number of successful extensions: 7544
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 7544
Number of HSP's successfully gapped: 1
Length of query: 3397
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3379
Effective length of database: 8,109,745
Effective search space: 27402828355
Effective search space used: 27402828355
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)