BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN22366 (UTR included)
(7180 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_335_C2 109 6e-23
BF01043B1E03 84 4e-15
BF01031B2E06 80 6e-14
>BF14_335_C2
Length = 1827
Score = 109 bits (55), Expect = 6e-23
Identities = 88/99 (88%)
Strand = Plus / Minus
Query: 4904 gagaggtataacggctaaatctctctacaacctaccaaaagacttgggcctgtccagaag 4963
|||||||||||| |||||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct: 1107 gagaggtataacagctaaatctctctacagcctactaaaatacttgggcctgtccagaac 1048
Query: 4964 tcacatcaattcattcttggaacctacttcgaaggcagc 5002
| ||| || ||||||||| |||| |||||||||| ||||
Sbjct: 1047 taacaccagttcattcttcgaacgtacttcgaagacagc 1009
>BF01043B1E03
Length = 830
Score = 83.8 bits (42), Expect = 4e-15
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 4897 tgggagcgagaggtataacggctaaatctctctacaacctaccaaaagacttgggcctgt 4956
|||||| | |||||||||| ||| ||||||||||||||||| ||| ||||| |||||
Sbjct: 204 tgggagtgcgaggtataacagcttcatctctctacaacctactgaaacacttgagcctgc 263
Query: 4957 ccagaagtcacatcaattcattcttggaacctacttcgaaggcagcccta 5006
|||||| | ||||||| ||||||||||||| |||| | ||||||| ||||
Sbjct: 264 ccagaactaacatcaaatcattcttggaacgtactgcaaaggcaggccta 313
>BF01031B2E06
Length = 707
Score = 79.8 bits (40), Expect = 6e-14
Identities = 97/116 (83%)
Strand = Plus / Plus
Query: 4887 gcggtagtagtgggagcgagaggtataacggctaaatctctctacaacctaccaaaagac 4946
||||||| |||||||||||| | | ||| |||||||||||| ||||||||| |||| |
Sbjct: 521 gcggtagaagtgggagcgagcgttgtaaaagctaaatctctccacaacctactaaaaacc 580
Query: 4947 ttgggcctgtccagaagtcacatcaattcattcttggaacctacttcgaaggcagc 5002
||||||||||||||| | ||||||| | || || |||| |||||||||||||||
Sbjct: 581 ttgggcctgtccagatctaacatcaaataatctttagaacatacttcgaaggcagc 636
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 105,277
Number of extensions: 13307
Number of successful extensions: 13307
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 13307
Number of HSP's successfully gapped: 3
Length of query: 7180
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 7162
Effective length of database: 8,109,745
Effective search space: 58081993690
Effective search space used: 58081993690
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)