BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN22390 (UTR included)
(2137 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01009B1H06 1560 0.0
>BF01009B1H06
Length = 848
Score = 1560 bits (787), Expect = 0.0
Identities = 833/848 (98%), Gaps = 2/848 (0%)
Strand = Plus / Plus
Query: 939 aatatgcttggtttggcaaggagagtcggtgcaaaaatcctaatagccagtacatcagag 998
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 aatatgcttggtttggcaaggagagtcggtgcccaaatcctaatagccagtacatcagag 60
Query: 999 gtttatggtgaccccatggtacatccacaaccagaatcatattggggtcatgtcaatcct 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtttatggtgaccccatggtacatccacaaccagaatcatattggggtcatgtcaatcct 120
Query: 1059 ataggaccacgcgcgtgttacgatgagggcaaaagagtggccgaaacacttgcgtactca 1118
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ataggaccgcgcgcgtgttacgatgagggcaaaagagtggccgaaacacttgcgtactca 180
Query: 1119 tacgctaagcaggagaatgtgtcggtacgtgttgcgaggatatttaacacgtatggacca 1178
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tacgcgaagcaggaaaatgtgtcggtacgtgttgcgaggatatttaacacgtatggacca 240
Query: 1179 agaatgcatgtctctgacggaagggtggtgtcaaacttcgttatgcaggcattacagaac 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaatgcatgtctctgacggaagggtggtgtcaaacttcgttatgcaggcattacagaac 300
Query: 1239 cttacaattactgtttacggcaacggtaaacagacgcgttcattttgttacgtgtcagat 1298
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 301 cttacaattactgtttacggaaacggtaaacagacacgttcattttgttacgtgtcagat 360
Query: 1299 ctagtcgatggtctcatagctttgatggcgtctagctacacgttacctgtcaatttgggc 1358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctagtcgatggtctcatagctttgatggcgtctagctacacgttacctgtcaatttgggc 420
Query: 1359 aatcccgtagaacacactatagaagaatttgctgtgattatcaagaacttagtccctggt 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatcccgtagaacacactatagaagaatttgctgtgattatcaagaacttagtccctggt 480
Query: 1419 tgtcgcagtacagtggcgacgggcgctgcagtagaagacgatcctcagcgccgcagacca 1478
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgtcgcagtacagtggcaactggcgctgcagtagaagacgatcctcagcgccgcagacca 540
Query: 1479 gacatcacgttagccaacacacatctcaaatggaagccaaaggtttcattagaagaggga 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gacatcacgttagccaacacacatctcaaatggaagccaaaggtttcattagaagaggga 600
Query: 1539 ctccaaagaacaatagaatacttcagagaagaattatccagaacaacattttataataat 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctccaaagaacaatagaatacttcagagaagaattatccagaacaacattttataataat 660
Query: 1599 cagacatatattgatgttaaggtaaaaaacaaacactaaaatactgaaagtcaaattttt 1658
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 661 cagacatatattgatgttaaggtaaaaaacaaacactaacatactgaaagtcaaattttt 720
Query: 1659 tatatatgtgatattagcattgtagtacatgaagtcaaatgatatagacttaacaaagcc 1718
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 721 tatatatgtgatattagcattgtagtacatgaagtcaaatgatatagacttaataaagcc 780
Query: 1719 acta--atatatatatgtatacttatattaaagtgacatataaaatgcaacataaggatc 1776
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 781 actaatatatatatatgtatacttatattaaagtgacatatannatgcaacataaggatc 840
Query: 1777 aagtcaat 1784
||||||||
Sbjct: 841 aagtcaat 848
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 318,275
Number of extensions: 7232
Number of successful extensions: 7232
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 7231
Number of HSP's successfully gapped: 1
Length of query: 2137
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2120
Effective length of database: 8,119,229
Effective search space: 17212765480
Effective search space used: 17212765480
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)