| New model in OGS2.0 | DPOGS207438 |
|---|---|
| Genomic Position | scaffold130:+ 21026-24229 |
| See gene structure | |
| CDS Length | 1266 |
| Paired RNAseq reads | 222 |
| Single RNAseq reads | 555 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009910 (2e-139) |
| Best Drosophila hit | CG5589 (3e-78) |
| Best Human hit | probable ATP-dependent RNA helicase DDX52 (2e-74) |
| Best NR hit (blastp) | PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Tribolium castaneum] (3e-105) |
| Best NR hit (blastx) | PREDICTED: similar to DEAD box ATP-dependent RNA helicase [Tribolium castaneum] (1e-96) |
| GeneOntology terms | GO:0003729 mRNA binding GO:0004004 ATP-dependent RNA helicase activity GO:0005524 ATP binding |
| InterPro families | IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site IPR014001 DEAD-like helicase IPR014014 RNA helicase, DEAD-box type, Q motif IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| Orthology group | MCL12086 |
Nucleotide sequence:
ATGGATGCTTACGATATATTTAAGAAACTGACCAAGGGTTTGACTTTTAAGCATCGCGTC
TTGGGAGTAAAAAACAAAGATGAGCCTATTAAATCAAGTTTAAAAAATGAAGTTATCAAA
GAAGAACGTGATATTAAAGAGGAGATTGAGAGTTGTTCAGATAATGAAGAGTCAAGTGTA
CCCCAGACGGATTCAGAACAAGATGTCAGTGACCCCGAACTACAAATTATAGAAGGTGAC
AAGGGTCAGTCGACAAGAAAAGAAAAGAAAAAGAAATCAAAATTAACTCCTGAAGAGTTA
CAAAAGAAGCTGGAACTAGAAGAGCAAAACCATTTCCGTAATGAGCATGGGATAAAAGCA
GTTGGCCGTCACATTCCTAACGCATTAAGAGACTTCAACGAACTGATTACAAAGTATAAT
ATATCCCCGTCAATGGTGGAAGTGCTTTTACAGTGTGGTTACTCTGAACCCACACCCATT
CAACGTCAAGCTGTACCATGTTTATTGGAGAATCGTCAAATCGTAGCCTGTGCTCCGACT
GGATCTGGTAAGACAGCAGCATTCTTAATGCCTCTCTTACACATGCTCGGAGCTCCTCAA
GGCGGTCCGAGAGCCCTGGTGCTTTGTCCCACCAGAGAACTGGCAAACCAGATATACCGC
GAGGCCATAAGACTCTCGGCATCCACTCAGTTGAGATGCTCAGTCATCAGGAGTCTCAAG
GAAAGTAAGATCAAGGAGCGAGAAGCTACGATAAGGAAGAGTGATTTAGTGATAAGTACA
CCGAATCGTCTCTGTTACTTGCTGAAACAGGAAACAGTGGGAATAAACATGGACAAAGTA
CAATGGCTGGTCATAGATGAAGCTGACAAGTTATTCGAGGGCTCCCAGGAGGAGGTGGAC
ACCTTCCGCCAACAGCTGGACATTATCCTCAGCAGCTGCAAGTCCCGCCTGGCCATGTTC
AGCGCGACACACACGCCATCTATCGCCAAGTGGGCGAGACACAACATGAGAGGGCTCATT
AACATCACCGTCGGACACAGGAACGCAGCTTCCTCATCGGTGGAGCAGGAACTTCTGTTC
TGTGGCAACGAGAGTGGGAAGCTGGTGGCTTTCAGACAACTCATTCAGAAGGGTCTCAAA
CCCCCCGTACTAGTGTTCGTCCAAAGTAAAGATCGCGCCAAAGAGCTGTTCAAGGAACTA
TTATACGACGGGATCCAGGTGGACGTCATACACGGAGACAGGACACAGGCACAGGTGGAG
TTATAG
Protein sequence:
MDAYDIFKKLTKGLTFKHRVLGVKNKDEPIKSSLKNEVIKEERDIKEEIESCSDNEESSV
PQTDSEQDVSDPELQIIEGDKGQSTRKEKKKKSKLTPEELQKKLELEEQNHFRNEHGIKA
VGRHIPNALRDFNELITKYNISPSMVEVLLQCGYSEPTPIQRQAVPCLLENRQIVACAPT
GSGKTAAFLMPLLHMLGAPQGGPRALVLCPTRELANQIYREAIRLSASTQLRCSVIRSLK
ESKIKEREATIRKSDLVISTPNRLCYLLKQETVGINMDKVQWLVIDEADKLFEGSQEEVD
TFRQQLDIILSSCKSRLAMFSATHTPSIAKWARHNMRGLINITVGHRNAASSSVEQELLF
CGNESGKLVAFRQLIQKGLKPPVLVFVQSKDRAKELFKELLYDGIQVDVIHGDRTQAQVE
L