| New model in OGS2.0 | DPOGS200834 |
|---|---|
| Genomic Position | scaffold585:+ 7076-11366 |
| See gene structure | |
| CDS Length | 798 |
| Paired RNAseq reads | 338 |
| Single RNAseq reads | 2007 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009888 (5e-52) |
| Best Drosophila hit | transformer 2, isoform F (2e-33) |
| Best Human hit | transformer-2 protein homolog alpha (7e-36) |
| Best NR hit (blastp) | transformer 2 isoform D [Bombyx mori] (6e-85) |
| Best NR hit (blastx) | transformer 2 isoform A [Bombyx mori] (3e-51) |
| GeneOntology terms | GO:0000166 nucleotide binding GO:0000398 nuclear mRNA splicing, via spliceosome GO:0003676 nucleic acid binding GO:0005634 nucleus |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL17362 |
Nucleotide sequence:
ATGTCAGACAGAGAGAGGAGCCGTTCGAGGACCCGCAACGGGTCTAGGGAGCCGGCGCCA
AAGCCTGCGGTCATGTCTCGTGGCCATAGCCGGAGCCGGTCTCGCACGCCTCCCCCGCCA
AAAGCATCCAGTAGGAAGTACAGAAGCCCGTCTCGCTCGAGGTCGGGGTCCGCTCGTCGT
TACCGCGGCAGCCGCTACTCTCGCTCCCGCTCCCGGTCGTACTCGCCCCGCGGCTCCTAT
CGCCGCTCACACTCGCATAGCCCGATGTCGTCTCGTAGACGGCATCTCGGTGATCGGGAA
AATCCGACTCCATCGAGATGTCTCGGAGTGTTCGGTCTCAGTCTCTACACTACTGAACAG
CAAATTCATCACATATTTTCAAAATTTGGACCAGTTGACAAAGTTCAAGTTGTGATTGAT
GCCAAGACTGGACGCTCCCGTGGTTTTTGCTTCGTGTATTTCGAGTCCCAGGACGACGCC
AAGGTGGCGAAGAACGAGTGTACTGGCATGGAGATAGACGGACGTCGCATACGAGTAGAC
TACTCCATCACACAGAGAGCTCACACACCCACACCGGGCATATACATGGGGAAACCCACG
CATGTAAGAGGAGATAACGGCTACGACAGACGCAGAGACAGAGACGACTACTACTACCGC
GGCGGCGGCTACCGCGAGCGCGAGCGCGACTACTACGCCCGCGGCTACCGACACCGCTCG
CCGTCCCCTCACTACCGCCGGCGCCGCTACGAGCGCGAGCGCTCCTACTCGCCGCGTAAG
TCTTACTACCACCCCTAG
Protein sequence:
MSDRERSRSRTRNGSREPAPKPAVMSRGHSRSRSRTPPPPKASSRKYRSPSRSRSGSARR
YRGSRYSRSRSRSYSPRGSYRRSHSHSPMSSRRRHLGDRENPTPSRCLGVFGLSLYTTEQ
QIHHIFSKFGPVDKVQVVIDAKTGRSRGFCFVYFESQDDAKVAKNECTGMEIDGRRIRVD
YSITQRAHTPTPGIYMGKPTHVRGDNGYDRRRDRDDYYYRGGGYRERERDYYARGYRHRS
PSPHYRRRRYERERSYSPRKSYYHP