| New model in OGS2.0 | DPOGS214955 |
|---|---|
| Genomic Position | scaffold1723:+ 5602-7372 |
| See gene structure | |
| CDS Length | 1275 |
| Paired RNAseq reads | 1545 |
| Single RNAseq reads | 5661 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004852 (0.0) |
| Best Drosophila hit | sec23, isoform B (0.0) |
| Best Human hit | protein transport protein Sec23A (4e-171) |
| Best NR hit (blastp) | PREDICTED: similar to protein transport protein sec23 [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to protein transport protein sec23 [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0006886 intracellular protein transport GO:0030127 COPII vesicle coat GO:0030868 smooth endoplasmic reticulum membrane GO:0048471 perinuclear region of cytoplasm GO:0005783 endoplasmic reticulum GO:0016020 membrane GO:0008270 zinc ion binding GO:0000139 Golgi membrane GO:0006888 ER to Golgi vesicle-mediated transport GO:0005515 protein binding GO:0005794 Golgi apparatus GO:0016192 vesicle-mediated transport |
| InterPro families | IPR006895 Zinc finger, Sec23/Sec24-type IPR006896 Sec23/Sec24, trunk domain |
| Orthology group | MCL11589 |
Nucleotide sequence:
ATGGCAACTTATGAAGAGTTCATTCAACAAAATGAAGATAGAGATGGCATCAGGTTTACG
TGGAACGTATGGGCTTCAAGTAGAATTGAAGCTACAAGGCTTGTTGTCCCTTTAGTTTGT
CTTTACCAGCCATTGAAGGAACGACCGGACCTACCTCCTATTCAATATGAACCAGTATTG
TGCACACGTAATACTTGTCGCGCAGTACTCAATCCAATGTGCCAAGTGGACTACAGAGCC
AAATTGTGGGTCTGCAATTTTTGTTTCCAAAGAAATCCTTTTCCCCCGCAATATGCTGCT
ATATCAGAACAGCATCAACCGGCGGAGCTCATCCCAAACTTTTCCACCATTGAGTACACC
ATAACCAGAGCACAAAGCATGCCACCCATTTTTCTGCTTGTGGTTGATACTTGCCTTGAT
GAAGAAGAACTCGGAGCTCTCAAAGACTCCCTACAAACTTCACTTAGTCTTATGCCTCAA
AATGCTCTTGTTGGACTTATTACATTTGGCCGTATGGTACAAATTCATGAATTGGGAACA
GAAGGCATATATAAGTGCTATGTTTTCAAGGGCACAAAAGATTTGACAGGTAAACAAATT
CAAGAACAATTAGCAATAGGCCGAGTCAATGCACCTAACCCTCAACAGAGACCCGGTACT
GCTCCACCTCAGCCACCGGCACATCGGTTCTTGCAACCAGTGAAACAGTGTGACATGGCT
CTCACGGATTTATTGAGTGAACTAGGTCGTGACCCTTGGCCATTAGGTGTCGGGAAACGT
CCTCTAAGAAGCAGCGGTGTCGCTCTGTCATTAGCTGTGGGAATGTTGGAGGTTACATAT
CCCAATACTGGTGCTAGAATCATGATGTTCCTTGGAGGACCATGCTCTCAAGGCCCCGGT
CAAGTTGTCAATGATGAATTGAAGCAACCAATTCGTTCCCATCATGACATCCATAAGGAC
AATGCAAAATATATGAAGAAGGCTATCAAACATTATGAAGCTTTGTCTCTTAGGGCTGCT
ACTAATGGCCATGCCATTGATATTTACTCATGTGCTCTAGACCAGACCGGGTTGATGGAG
ATGAAACAGTGTTGTAATTCTACAGGTGGACACATGGTAATGGGTGATTCATTCAATTCG
TCATTGTTCAAGCAAACATTCCAAAGAGTCTTTGCTAAGGATCAGAAAGGAGATTACAAA
ATGGCATTCAACGGAACATTGGAAGTTAAATGTAGCCGTGAACTGAAAAGTATGTTGTAT
AATTACATTATATAA
Protein sequence:
MATYEEFIQQNEDRDGIRFTWNVWASSRIEATRLVVPLVCLYQPLKERPDLPPIQYEPVL
CTRNTCRAVLNPMCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPNFSTIEYT
ITRAQSMPPIFLLVVDTCLDEEELGALKDSLQTSLSLMPQNALVGLITFGRMVQIHELGT
EGIYKCYVFKGTKDLTGKQIQEQLAIGRVNAPNPQQRPGTAPPQPPAHRFLQPVKQCDMA
LTDLLSELGRDPWPLGVGKRPLRSSGVALSLAVGMLEVTYPNTGARIMMFLGGPCSQGPG
QVVNDELKQPIRSHHDIHKDNAKYMKKAIKHYEALSLRAATNGHAIDIYSCALDQTGLME
MKQCCNSTGGHMVMGDSFNSSLFKQTFQRVFAKDQKGDYKMAFNGTLEVKCSRELKSMLY
NYII