| New model in OGS2.0 | DPOGS213687 |
|---|---|
| Genomic Position | scaffold1035:- 4105-9386 |
| See gene structure | |
| CDS Length | 1221 |
| Paired RNAseq reads | 408 |
| Single RNAseq reads | 1009 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010344 (5e-122) |
| Best Drosophila hit | Syntrophin-like 1, isoform B (4e-72) |
| Best Human hit | beta-1-syntrophin (2e-52) |
| Best NR hit (blastp) | PREDICTED: similar to AGAP012354-PA [Acyrthosiphon pisum] (3e-99) |
| Best NR hit (blastx) | PREDICTED: similar to AGAP012354-PA [Acyrthosiphon pisum] (3e-81) |
| GeneOntology terms | GO:0008307 structural constituent of muscle GO:0016013 syntrophin complex GO:0008092 cytoskeletal protein binding GO:0005515 protein binding |
| InterPro families | IPR001478 PDZ/DHR/GLGF IPR015482 Syntrophin |
| Orthology group | MCL11353 |
Nucleotide sequence:
ATGCCTATACTGATATCTAAAATATTCAAAGGCATGGCAGCAGACCTGACAGAGCAATTG
TATGTAGGTGATGCCATTTTATCTGTTAATGGGGAAGATTTAAAAGATGCCACACATGAA
GAAGCAGTCAAAGCTCTCAAGCGAGCAGGGAAAATGGTTCAGCTAGAAGTGAAATACTTG
AGAGAGGTAACTCCATATTTTCGTAAAGCATCAATTATAAGTGAGGTCGGCTGGGAGTTG
CAACGAGGTTATATGGTAGAGACCCCACCATCACCACCCTCTCCGCGCCGAAGACGGGCT
GATACCAGATATGTACCACTTCTTATGGCCTGCGTAGCCAAAAATTTGAGACATCATGAC
CCTGAGGATCGGACTATAGAGATATATTCGCCGGACGGTGTCCACGCTTTGGCTCTGCGT
GCTCCTTGTGGCACTTCCGCAGCAGGTTGGCACAGGGCGCTACACGCGGCGGCACGGCGT
GCAGCACGAGCGGCACTTGCACGTGCCCGGCCACGTCTGCGCCCGCTCATCGGTGACGTC
AGATACGCTGGCTGGCTGGCGAGGCGCCCACCGCAGGAACCACTGGGTGCGTCAGGTGGT
TCTGACAGCTCCGATGATGCAGAAGGATGGCAGCCAACGTTTGTTGCAATCACCGATAGA
GAATTGAGGTTATACGAAGCGGCGCCGTGGTCGGGGGAGGCGTGGTGCGCGCCGAGTGAG
AGCTTCAGCCTGGCGGCGACTCGCCTGGCGTGGTGGAGGAGGGGTGAAGGGGCGGCGGCT
CTTGGCGTGCGGGCGGGGACTCCGGCCGGGCTGTGTGTGAGAGCGCTGAGGGCGGACACG
CCTCACGACCTGGCAGCCGTTGCGGGCTCGCTCGTTGACGGCGCACATCATGCTGTGCGA
GCGCAGCCAGAATTCACCTTCCGTTGCCGCTACCGTGGCGCGTGCGCTCGTCTGTCTCTA
GGAGCGGGCGGCGTGTGTGTGTGGGAGGCGGCGGGGTCGTTGGGTCGCGGCGGGGCGCGC
GCCCTCTACCGCCGCGCGCTGCACGCCCTGCGAGCCTCCGCGGACGACGACCGCACCGCA
CTCTGGCTGCACTTTGCTGACGACGACACACTGGAGCTTGATATGGAGGGTAGTCCGAAG
CCGGCTGTATTTATTCTGCATAATCTTCTATCAGCGCGTGTTCACTCCTTGCCAGGCGAG
GCGACTTCACACCCTGTATAA
Protein sequence:
MPILISKIFKGMAADLTEQLYVGDAILSVNGEDLKDATHEEAVKALKRAGKMVQLEVKYL
REVTPYFRKASIISEVGWELQRGYMVETPPSPPSPRRRRADTRYVPLLMACVAKNLRHHD
PEDRTIEIYSPDGVHALALRAPCGTSAAGWHRALHAAARRAARAALARARPRLRPLIGDV
RYAGWLARRPPQEPLGASGGSDSSDDAEGWQPTFVAITDRELRLYEAAPWSGEAWCAPSE
SFSLAATRLAWWRRGEGAAALGVRAGTPAGLCVRALRADTPHDLAAVAGSLVDGAHHAVR
AQPEFTFRCRYRGACARLSLGAGGVCVWEAAGSLGRGGARALYRRALHALRASADDDRTA
LWLHFADDDTLELDMEGSPKPAVFILHNLLSARVHSLPGEATSHPV