| New model in OGS2.0 | DPOGS202136 |
|---|---|
| Genomic Position | scaffold1360:+ 11044-12879 |
| See gene structure | |
| CDS Length | 1572 |
| Paired RNAseq reads | 619 |
| Single RNAseq reads | 1513 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001509 (0.0) |
| Best Drosophila hit | CG3071 (1e-109) |
| Best Human hit | U3 small nucleolar RNA-associated protein 15 homolog (2e-94) |
| Best NR hit (blastp) | PREDICTED: similar to U3 small nucleolar RNA-associated protein, putative [Tribolium castaneum] (4e-162) |
| Best NR hit (blastx) | PREDICTED: similar to U3 small nucleolar RNA-associated protein, putative [Tribolium castaneum] (1e-157) |
| GeneOntology terms | GO:0006890 retrograde vesicle-mediated transport, Golgi to ER GO:0030126 COPI vesicle coat GO:0006364 rRNA processing GO:0005730 nucleolus |
| InterPro families | IPR019782 WD40 repeat 2 IPR017986 WD40-repeat-containing domain IPR011046 WD40 repeat-like-containing domain IPR015943 WD40/YVTN repeat-like-containing domain IPR001680 WD40 repeat IPR018983 U3 small nucleolar RNA-associated protein 15, C-terminal IPR019781 WD40 repeat, subgroup |
| Orthology group | MCL13298 |
Nucleotide sequence:
ATGGCACATATATCTTATCCGTTTAAAAAAACAAACAAAGCTGTATATCAAAAACCTGCC
TCTGTTTTAACTGAGGATACCCTTTATTGGAAGAAACTTGGGCTTCCAGTGCTAGTTAAA
GAATTTGGAGCTATAGACTATCTGGATTTCAGCCCAGTAGAGCCCTATTATTTTGCTGCG
ACATGCTCTGTCAGAGTACAGGTTTATGACCCTATTTCAAAAGTGGTGGCAAAGAATATA
TCAAAATTTGTTGAGGCCGCATATGGAGGTTGCTTCAGAAACGATGGAAGGTTACTTGTT
GCTGGTAGTGAAGAATCTGTTGTAAAATTGTTTGATGTCCAATCAAAAAATGTGTTGAGA
GTGTTTACAGGTCACACTGGTCCGGTACATAGAACATTCTTTACTAAAGATCAAGTAAAA
GTCCTTAGTTTCTCTGATGACAAATCAGTTTGTTTATGGGATATTGCAACTGAAGAAAAA
ATTGCAAGCTTCTGTGAACACACGGACTATGTGAGGGCTGGTGCTCCAAGTCCAATTTTA
CCGGACATCATATTATCTGGTGGTTATGACCATGCTGTTAAATTATATGACTGTCGATCA
AATGAAACGGTTCTCACAGTTGACCATGGCAGTCCAGTTGAATCTACATTATTTTTACCA
TCTGGAGGAATATTTATTAGTGCTGGCGGCACTGAGATCAAAGTATGGGATATATTTAAC
GGTGGAAAATTACTTGCAAATATTTCACAGCACCACAAAACTGTTACAACTTTAAGGCTA
GCTAGCAATAATAGCAGACTTATGTCAGCATCGCTTGATAGGCATGTAAAGATTTATGAT
CTAGCCACATTCAAAGTGGTCCACAATATTGACTTCCCGAATGCTGTGTTAAGTATGGCA
ATATCAGAGTGTGATGATGTGCTAGCAGTTGGAATGATTGATGGGGTTATTTCTATAAGA
AAGAGAGAACAACCGGCATCATTGTTTGAAGAAAAGAGGGGACTATTCAAATTTGCCCCC
GACCACATAACAGCAGAAACTGTAGATGAGGTTGTTTCAAAACAAAAGATCGAAAAGGGA
CCTGATTACGACAAATTTCTAAGAAAAATGGAATTCAGCAAAGCACTATCAGCTGTATTG
AAAACTTATGTAGCAACTAAATTTCCCGAAAAAACCATCGCTCTGATGCAAGAAATGCTG
AGAAGGAAAGTCCTACATTCAGCCATAAAAGGAATAAAAGAAAACGAAGTAGGAGCACTT
CTGAAATTCTTTAAAAAAAATTTAGGTGAAACAAGATTCACAAGGACTATTATCGATGCT
ACTAATGTTTTCATTGATGTTTTTGAAAATGAAATCAAACTATTTTCTGAACAAAATTTA
TGCCTTTACAAGTCATTGCTAGAAGAAATTAAAGAGGAAATAGAAGTCTGTAAAAGAGTT
AGTGAGCTTGAAGGTGCCATTGGACTTATTCTATCTGGTGCTCAAGTTGGTACAAGCCAA
GATATTATAGAACTAAATGACAATATGGCTCCGTCAGCTAAAGCTCGGAAAGATATTGTA
ATAGATGTTTGA
Protein sequence:
MAHISYPFKKTNKAVYQKPASVLTEDTLYWKKLGLPVLVKEFGAIDYLDFSPVEPYYFAA
TCSVRVQVYDPISKVVAKNISKFVEAAYGGCFRNDGRLLVAGSEESVVKLFDVQSKNVLR
VFTGHTGPVHRTFFTKDQVKVLSFSDDKSVCLWDIATEEKIASFCEHTDYVRAGAPSPIL
PDIILSGGYDHAVKLYDCRSNETVLTVDHGSPVESTLFLPSGGIFISAGGTEIKVWDIFN
GGKLLANISQHHKTVTTLRLASNNSRLMSASLDRHVKIYDLATFKVVHNIDFPNAVLSMA
ISECDDVLAVGMIDGVISIRKREQPASLFEEKRGLFKFAPDHITAETVDEVVSKQKIEKG
PDYDKFLRKMEFSKALSAVLKTYVATKFPEKTIALMQEMLRRKVLHSAIKGIKENEVGAL
LKFFKKNLGETRFTRTIIDATNVFIDVFENEIKLFSEQNLCLYKSLLEEIKEEIEVCKRV
SELEGAIGLILSGAQVGTSQDIIELNDNMAPSAKARKDIVIDV