New model in OGS2.0 | DPOGS210544  |
---|---|
Genomic Position | scaffold170:- 82651-91342 |
See gene structure | |
CDS Length | 1785 |
Paired RNAseq reads   | 272 |
Single RNAseq reads   | 682 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA013465 (2e-122) |
Best Drosophila hit   | CG7708, isoform B (0.0) |
Best Human hit | high affinity choline transporter 1 (3e-134) |
Best NR hit (blastp)   | high-affinity choline transporter [Trichoplusia ni] (0.0) |
Best NR hit (blastx)   | high-affinity choline transporter [Trichoplusia ni] (0.0) |
GeneOntology terms    | GO:0005298 proline:sodium symporter activity GO:0008292 acetylcholine biosynthetic process GO:0016021 integral to membrane GO:0015220 choline transmembrane transporter activity GO:0003333 amino acid transmembrane transport GO:0015171 amino acid transmembrane transporter activity |
InterPro families   | IPR001734 Sodium/solute symporter |
Orthology group | MCL14003 |
Nucleotide sequence:
ATGATCAACATAGCCGGAGTGATCTCCATCATCCTCTTCTACGTTCTAATTCTGGCCGTG
GGGATATGGGCGGGGCGCAAGAAGCCGCCAGGTAACGACTCCGAAGAAGAAGTGATGCTG
GCAGGACGATCCATTGGATTGTTCGTTGGCATCTTCACTATGACCGCGACGTGGGTGGGT
GGAGGCTACATCAATGGCACCGCTGAAGCCATCTATACTTCGGGGCTGGTGTGGTGTCAG
GCCCCCTTCGGGTACGCGCTGTCACTCGTCTTTGGCGGCATCTTCTTCGCCAATCCGATG
CGTAAACAGGGTTACGTGACCATGTTGGATCCTCTCCAGGACTCGTTCGGCAGTCGTATG
GGAGGACTGTTGTTCCTGCCCGCGCTCTGTGGGGAGGTGTTCTGGGCTGCTGGAATCCTT
GCAGCACTTGGCGCCACGCTGGCCGTCATCATAGACATGGACCACCGCACGTCCGTCATC
TTCAGCGCCTGCGTCGCCGTCTTCTACACCCTGTTCGGAGGCCTGTACTCCGTCGCCTAC
ACTGACGTCATCCAGCTGTTCTGTATCTTCATCGGCCTCTGGATGTGCATTCCTTTTGCC
TGGGCCAACGAACACGTCAAACCTCTCAGCTCTATGGAAGTGGACTGGATAGGAAAGATC
GATCCGGAGTATTACTGGTTCTATGTGGATTACGGGCTATTGCTCATTTTTGGAGGTATC
CCGTGGCAGGTATACTTTCAGCGTGTTCTTAGCAGCAAGACCGCCGGCCGAGCTCAAGTG
CTGTCGTATGTGGCAGCTATAGGTTGTATCTTCATGGCCATACCGCCCGTACTTATTGGA
GCCATCGCTAAAGGCACCGCTTGGAACGAGACGGAGTATCACGGACCTTTGACGGCCGAT
GGTGAGTTGACTTCGGAACAAACGTCGATGATCCTGCCGCTCGTGCTGCAACACCTCACT
CCAGACTTCGTGTCATTCTTCGGTCTGGGTGCTGTCTCAGCTGCGGTGATGTCGTCAGCT
GACTCCAGCGTGCTCAGCGCTTCCTCTATGTTTGCGAGAAACGTGTACAAGCTGATATTC
CGTCAAAACGCTTCTGAGATGGAGATCATTTGGGTGATGCGTGTGTCTATCCTGGTGGTG
GGAGTCCTCTCCACCATCATGGCTCTCACCATCCCCTCTATATATGGCTTGTGGTCGATG
TGCTCGGACCTGGTGTATGTCATCCTGTTTCCTCAACTGCTGATGGTGGTGCACTTCAAG
CATCACTGTAACACGTACGGCTCGCTGGCGGCCTATATTGTTGCTTTAATGGTGCGACTC
TCCGGTGGTGAGAAGCTGCTGGGCCTGCCCGCTCTCATCCACTACCCCGGGTGGGACGCC
ACCAACGAGGTTCAGTTGTTCCCCTTCAGGACGCTGGCCATGGTGCTGTCACTCTTCACA
CTGGCTTTCATCTCGTGGCTATCCGTGTTCTTGTTCAACTCCGGTTACTTGAGTCCTGAA
TCCGATTACTTTAACTGCGTCGTGAACATCCCCGAGGATATTAGAAGAGTGGACGAGCCC
TCCGAGGCTGGGGAGCAGATGTCGGTCCTGGGAGGAGTTCCCGGTAGGCTATATGGAGCT
GCTTCCACTCTCGTGGGTCCGGATGAGAAGTCGGGAAGGATCAACCCGGCCCTGGAACCC
GACGATGACGATCTGGACGACCCCAATGATGGCCCCACGCCGCTCTTCGGATCCAGCAGT
GCACCTCCACCGGTCCAGCCGTTCGGAAAACAGACAGCTTTCTGA
Protein sequence:
MINIAGVISIILFYVLILAVGIWAGRKKPPGNDSEEEVMLAGRSIGLFVGIFTMTATWVG
GGYINGTAEAIYTSGLVWCQAPFGYALSLVFGGIFFANPMRKQGYVTMLDPLQDSFGSRM
GGLLFLPALCGEVFWAAGILAALGATLAVIIDMDHRTSVIFSACVAVFYTLFGGLYSVAY
TDVIQLFCIFIGLWMCIPFAWANEHVKPLSSMEVDWIGKIDPEYYWFYVDYGLLLIFGGI
PWQVYFQRVLSSKTAGRAQVLSYVAAIGCIFMAIPPVLIGAIAKGTAWNETEYHGPLTAD
GELTSEQTSMILPLVLQHLTPDFVSFFGLGAVSAAVMSSADSSVLSASSMFARNVYKLIF
RQNASEMEIIWVMRVSILVVGVLSTIMALTIPSIYGLWSMCSDLVYVILFPQLLMVVHFK
HHCNTYGSLAAYIVALMVRLSGGEKLLGLPALIHYPGWDATNEVQLFPFRTLAMVLSLFT
LAFISWLSVFLFNSGYLSPESDYFNCVVNIPEDIRRVDEPSEAGEQMSVLGGVPGRLYGA
ASTLVGPDEKSGRINPALEPDDDDLDDPNDGPTPLFGSSSAPPPVQPFGKQTAF