| New model in OGS2.0 | DPOGS201658 |
|---|---|
| Genomic Position | scaffold5347:+ 224-3998 |
| See gene structure | |
| CDS Length | 987 |
| Paired RNAseq reads | 502 |
| Single RNAseq reads | 1399 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013842 (5e-64) |
| Best Drosophila hit | cleavage and polyadenylation specificity factor 160, isoform B (1e-97) |
| Best Human hit | cleavage and polyadenylation specificity factor subunit 1 (3e-95) |
| Best NR hit (blastp) | PREDICTED: similar to cleavage and polyadenylation specific factor 1 [Apis mellifera] (3e-132) |
| Best NR hit (blastx) | PREDICTED: similar to cleavage and polyadenylation specific factor 1 [Apis mellifera] (5e-128) |
| GeneOntology terms | GO:0003676 nucleic acid binding GO:0005634 nucleus |
| InterPro families | IPR004871 Cleavage/polyadenylation specificity factor, A subunit, C-terminal |
| Orthology group | ND |
Nucleotide sequence:
ATGTGTGTCTGTGGTTTTATACAGTTGTCTGGTCTCCGCGGTTACATCGCGATAGGAACT
AATTATAACTACGGAGAGGATATTACTTCTAGAGGGAGGATTTTGATTTACGATATAATA
GATGTCGTACCAGAACCGGGCCAGCCGTTGACCAAAAATAGGTTTAAAGAAATATACGCG
AAGGAACAGAAGGGTCCCGTGACAGCTCTCACACAAGTTTTAGGGTTCCTCATATCGGCT
GTGGGTCAGAAGATATATCTCTGGCAGCTGAAGGACAACGACCTCGTCGGCGTAGCGTTC
ATTGACACCCAAATTTACGTCCACAGAATGTTGGCTGTTAAGAATCTGATATTGGTAGCT
GATGTTTACAAATCAATATCCCTCCTGAGATACCAACACCAACACAGGACGCTGTCGCTC
GTGTCCAGGGACCTCAGGACGGCTCAGATATACGACATGCAGTTCATGATAGACAACACG
AGTCTGGGCTTCCTCGTGAGTGAGTCGGAGGGTAACTTTGCTATGTACATGCACCAGCCT
CAAGCCAGAGAGAGTTACGGAGGTCAGCGTTTGATTCGTAAATGTGATTATCATCTGGGA
CAAAGAGTACACGCCATGTTTCGTTTGGCGGCTAGAGGGGAGAGACAGACACACGTCACT
ATGTTCACAACCCTCGACGGGGGAGTAGGCTACGTGCTGCCTGTCTCAGAGAAGGTCTAC
CGAAGATTATTGATGTTGCAGAACGTCATCAACAACTACTGCTGCCATCTAGCGGGACTC
AACCCTAAAGCTTACAGGACGTACAAAGTATCGCGTCGCGCCTTGTGTGGTGGAGCTGCG
CGAGGAGTGCTCGACGGAGATCTGGTCTCATTGTACACGAGCATGCCACGGACAGAACAA
CAGGATATCGCGAGAAAAATTGGTACGAAAGTTGAGGAGATTATGTCTGATCTATATGAG
ATAGACAGACAGACGGCTCATTTCTAG
Protein sequence:
MCVCGFIQLSGLRGYIAIGTNYNYGEDITSRGRILIYDIIDVVPEPGQPLTKNRFKEIYA
KEQKGPVTALTQVLGFLISAVGQKIYLWQLKDNDLVGVAFIDTQIYVHRMLAVKNLILVA
DVYKSISLLRYQHQHRTLSLVSRDLRTAQIYDMQFMIDNTSLGFLVSESEGNFAMYMHQP
QARESYGGQRLIRKCDYHLGQRVHAMFRLAARGERQTHVTMFTTLDGGVGYVLPVSEKVY
RRLLMLQNVINNYCCHLAGLNPKAYRTYKVSRRALCGGAARGVLDGDLVSLYTSMPRTEQ
QDIARKIGTKVEEIMSDLYEIDRQTAHF