| New model in OGS2.0 | DPOGS213848 |
|---|---|
| Genomic Position | scaffold1357:+ 38137-40746 |
| See gene structure | |
| CDS Length | 1971 |
| Paired RNAseq reads | 268 |
| Single RNAseq reads | 640 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013788 (0.0) |
| Best Drosophila hit | CG9518 (2e-115) |
| Best Human hit | choline dehydrogenase, mitochondrial precursor (1e-69) |
| Best NR hit (blastp) | PREDICTED: similar to alcohol dehydrogenase [Acyrthosiphon pisum] (9e-161) |
| Best NR hit (blastx) | PREDICTED: similar to alcohol dehydrogenase [Acyrthosiphon pisum] (1e-157) |
| GeneOntology terms | GO:0008812 choline dehydrogenase activity GO:0006066 alcohol metabolic process GO:0050660 FAD binding |
| InterPro families | IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal IPR012132 Glucose-methanol-choline oxidoreductase |
| Orthology group | MCL16728 |
Nucleotide sequence:
ATGATATCTAATGATACTGAAGATTCTACAACATTTTTCTTTACTGAAAATTGTGAAGGA
GGTTTGGAAATAAACCAAACTAAGAATGCTATACTTGAAAATGGAATTGAACTCCTTCAA
ACTTCTGGTGAAATATTTCCTTACATCGACTCTCAAAACCAAACTGACAAACCTGAAGAA
CCAGAATTAATTGAAGAACCTCCGGATAAAAATATAAACTTAAACTCTAAACTAACACAA
AAAGAGAAACTTATAAAAACGAGTGCAAAGAAATCTAACAAATATGACTTTATTATTGTC
GGTGCTGGTTCAGCTGGCTGTGTTTTAGCCAATAGACTTTCAGAAGTAACGTCATGGCGG
ATACTTCTTTTAGAAGCTGGATCTGAAGAACCAGATATAACAATGATGCCAGCTGCCATA
AGAGTTCTTAGCGGATCAAATATCGATTGGAATTATAATACTCAGCCGGAAGAACTGACT
TGCAGGTCCATGACGAAACACTTATGCCAATGGCCCAGGGGTAAGACTTTAGGGGGTTCG
AGTGCTATTAACTACATTATTTACATGAGAGGAAATAGACATGATTACGACCACTGGGCG
GAAGTAGGAAATGAAGGCTGGAGCTACAATGAATTGCTGCCATATTTTAAGAAAATTGAA
AACAGTGCTGATATTGAATCTCGTGACACACAGAACGGAGTAGGGGGACCGCTGAACGTA
GAAAGATACACTTATGTTGATGCAAATACAATTATGCTAGTTAAAGCTTTAAATGAGTCC
GGCCTTCCACTCATAGATTTAACCGGAGGAAATAGCGTCGGGACCAACATAGCTTCATCT
ACATCAAAAGATGGACGAAGAATGTCCACTAATGTAGCATATATTAAACCTATACGAGAT
ATAAGATCAAATATTGATATAATTCTAAATGCATTTGTTACAAAATTAATTATAAATCCT
AAAACAAAAAGGGCACTAGGTGTTACTTATGTTAAAAATGGGACTGCTTACAATGTTTTT
GCCAAAAATGAGGTAATATTAAGTACTGGATCCCTGAATTCACCTAAACTTCTAATGTTA
TCTGGAGTCGGGCCTAGAGAACACATAGAAAATTTCCGCATACCAGTCGTTGCAGATTTG
CAAGTGGGACATAATTTACAAGACCATACTACAGCGAATGGTTTCGTTCTCGCTCTGGCA
AATAAAACATGGACTAACGTAAGCGACACGGTTTTATTTCAAGAAATACAAAATTACTAC
GAACAGGAACCCAAAAAAAGTGGACCGTTATCTACCACTAGTACTCTTAATAGTATTGGT
TTTCTAAAAACTAAATATGCACGTGAAAATGCACCGGATATTCAATTCCATTTTGATGGT
GTGAATGTCGAGGAGCTATACTCTGATCCTCCCGCTTATTTGGAAAGCAACGTACTTCCG
ATTTCTTATTATAATGGACTTTCACCAAAGGCAATATTATTGGTACCAAGAAGCAGAGGC
ATAGTTTTACTAAACGACACAGATCCCGTGAATGGGCCGCCCTTAATTTATCCCAGGTTT
TTCACAGTCAAGGAAGATCTTGACGTACTCTTTGAAGGATTCCGTTATCTTATTGGTTTA
GAAGAAACCAAATCATTTAAAGAAAATGGTGCACACTTTGTTAAAATTCCTGTAAAAAAT
TGCGAAGATTATATCTGGGGATCTTATAACTACTTTAAATGCTTACTTGTTGAATATACT
GTAACTCTGTATCATCCTGTTGGCACTTGTAAAATGGGACCACCGTCCGATAAAGATGCT
GTTGTCGATCCTAGATTACGGGTTTACGGTGTCAAGGGTTTGAGAGTAATAGACGCGTCT
ATAATGCCATTTATAGTTAGGGGAAATACGAATATACCAACTATAACTATAGCAGAAAAG
GGAGCAGATATGATTAAAAAGGATTATTTAAAACGATGCAATTCTAACTGA
Protein sequence:
MISNDTEDSTTFFFTENCEGGLEINQTKNAILENGIELLQTSGEIFPYIDSQNQTDKPEE
PELIEEPPDKNINLNSKLTQKEKLIKTSAKKSNKYDFIIVGAGSAGCVLANRLSEVTSWR
ILLLEAGSEEPDITMMPAAIRVLSGSNIDWNYNTQPEELTCRSMTKHLCQWPRGKTLGGS
SAINYIIYMRGNRHDYDHWAEVGNEGWSYNELLPYFKKIENSADIESRDTQNGVGGPLNV
ERYTYVDANTIMLVKALNESGLPLIDLTGGNSVGTNIASSTSKDGRRMSTNVAYIKPIRD
IRSNIDIILNAFVTKLIINPKTKRALGVTYVKNGTAYNVFAKNEVILSTGSLNSPKLLML
SGVGPREHIENFRIPVVADLQVGHNLQDHTTANGFVLALANKTWTNVSDTVLFQEIQNYY
EQEPKKSGPLSTTSTLNSIGFLKTKYARENAPDIQFHFDGVNVEELYSDPPAYLESNVLP
ISYYNGLSPKAILLVPRSRGIVLLNDTDPVNGPPLIYPRFFTVKEDLDVLFEGFRYLIGL
EETKSFKENGAHFVKIPVKNCEDYIWGSYNYFKCLLVEYTVTLYHPVGTCKMGPPSDKDA
VVDPRLRVYGVKGLRVIDASIMPFIVRGNTNIPTITIAEKGADMIKKDYLKRCNSN