New model in OGS2.0 | DPOGS208171  |
---|---|
Genomic Position | scaffold896:- 8637-10202 |
See gene structure | |
CDS Length | 1566 |
Paired RNAseq reads   | 1333 |
Single RNAseq reads   | 3284 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA010259 (0.0) |
Best Drosophila hit   | CG7878 (5e-157) |
Best Human hit | probable ATP-dependent RNA helicase DDX43 (7e-147) |
Best NR hit (blastp)   | DEAD box ATP-dependent RNA helicase [Aedes aegypti] (0.0) |
Best NR hit (blastx)   | DEAD box ATP-dependent RNA helicase [Culex quinquefasciatus] (0.0) |
GeneOntology terms    | GO:0004004 ATP-dependent RNA helicase activity GO:0004386 helicase activity GO:0003723 RNA binding GO:0005524 ATP binding |
InterPro families    | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR014014 RNA helicase, DEAD-box type, Q motif IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site |
Orthology group | MCL12393 |
Nucleotide sequence:
ATGATAAATAAACTGATCGAGGATCGTAAACCGCCAACGAGGGAACATTTTAACAACAGT
GACACTGGAAGTGGTTCTAATGATTTTATGAAACAAAGTCAAGACGGTGTTGAGATTATT
GATTGGGATAAATTAAATGCTGCACATGACGAAGAGCAAAAAAAGAGATGGGATAGCTTA
CCTCCAATCATTAAAGATTTCTATAAGGAAGATCCCACTGTGGCCGGTATGACCCCAGCA
GATGTAACTCGCTGGAGGTTGGCTAACCATGACATTCAAGTAAAAAGAACATTTGATGAC
AAACCAGAGCTCCGTCCCATTCCCAATCCTGTTTTAACATTTGAACAGGCATTTCATCAA
TATCCAGAAATTTTGGAAGAAATTTATAAGCAAGGCTTTAAGCAACCATCTCCAATTCAG
AGTCAAGCTTGGCCAATTTTGCTCAGGGGTGATGATATGATTGGTATAGCACAAACTGGA
ACTGGGAAGACATTAGCTTTTCTGTTGCCTGCTTTAATACATATTGATGGACAAACCATT
CCGAGGGAAGAGAGAGAAGGTCCAACTGTATTAATATTAGCACCAACTCGGGAACTCGCT
CTGCAGATTGAGAAGGAAACATTAAAATACCAATACAAGGGAATAACTTCTGTCTGCCTA
TACGGCGGTGGAGATAGAAAGGAACAAATAAAAATGTGTAAAGGTGGTGTAGATATTGTC
ATTGCTACACCAGGAAGATTGAATGATCTTGTCTTGGCTCGTCATCTGAATATAATAAAT
TTTTCATACATCGTTCTTGATGAAGCAGACAGAATGTTGGATATGGGTTTTGAACCACAA
ATCAGAAAGTCCTTATATGATGTGAGACCAGACCGCCAAACTGTTATGACATCTGCCACT
TGGCCTGCAGGTGTACGTCGTCTAGCCGAGTCATATATGAAAGATCCAATACAGGTAAAT
GTAGGATCTTTAGACCTTGCAGCTGTACACACTGTAACTCAGAAAATTGTGTTCCTCGAG
GAAGATGACAAGGAGGCAGCTCTTTTTGAATTCATTCAAAACATGGATAAAAATGATAAA
GTCATCATATTCTGTGGGAAGAAAGCTACAGCCAGGCATATTTCGACGGAACTCTGCTTA
AAAGGCATTGAGTGTCAATCTCTTCATGGGGATAGGGAGCAAATTGACCGGGAAGCTGCT
TTGGAAGAAATGGTTGATGGCACAGTTAATATTCTAGTAGCTACTGATGTAGCTTCTAGG
GGCATTGATATAAAAGACTTAACACATGTTGTCAACCTGGATTTCCCCCGTCACATTGAA
GAGTATGTCCACAGAGTTGGTAGAACTGGAAGAGCTGGAAAGACAGGCATATCTCTGTCT
TTCATAACAAGACAGGACTGGGCTCACGCTCAGGATTTGATAAAAATCTTAGAAGAAGCT
AATCAAGAAATTCCAGATGAGTTGTTATCTATGGCTAACAGATTTGAGGCTATGAAAATT
CGTAGGGAACAAGAGGGTGGGGATAGAAGGGGCCGAGGTGGAAGGGGTAGGAGGGGTAGA
TACTGA
Protein sequence:
MINKLIEDRKPPTREHFNNSDTGSGSNDFMKQSQDGVEIIDWDKLNAAHDEEQKKRWDSL
PPIIKDFYKEDPTVAGMTPADVTRWRLANHDIQVKRTFDDKPELRPIPNPVLTFEQAFHQ
YPEILEEIYKQGFKQPSPIQSQAWPILLRGDDMIGIAQTGTGKTLAFLLPALIHIDGQTI
PREEREGPTVLILAPTRELALQIEKETLKYQYKGITSVCLYGGGDRKEQIKMCKGGVDIV
IATPGRLNDLVLARHLNIINFSYIVLDEADRMLDMGFEPQIRKSLYDVRPDRQTVMTSAT
WPAGVRRLAESYMKDPIQVNVGSLDLAAVHTVTQKIVFLEEDDKEAALFEFIQNMDKNDK
VIIFCGKKATARHISTELCLKGIECQSLHGDREQIDREAALEEMVDGTVNILVATDVASR
GIDIKDLTHVVNLDFPRHIEEYVHRVGRTGRAGKTGISLSFITRQDWAHAQDLIKILEEA
NQEIPDELLSMANRFEAMKIRREQEGGDRRGRGGRGRRGRY