| New model in OGS2.0 | DPOGS208188 |
|---|---|
| Genomic Position | scaffold5265:- 82-7291 |
| See gene structure | |
| CDS Length | 2574 |
| Paired RNAseq reads | 4658 |
| Single RNAseq reads | 10556 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010124 (0.0) |
| Best Drosophila hit | Semaphorin-5c, isoform B (2e-127) |
| Best Human hit | semaphorin-5A precursor (2e-104) |
| Best NR hit (blastp) | PREDICTED: similar to Sema-5c CG5661-PA [Apis mellifera] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to Sema-5c CG5661-PA [Apis mellifera] (1e-156) |
| GeneOntology terms | GO:0005886 plasma membrane GO:0007411 axon guidance GO:0001700 embryonic development via the syncytial blastoderm GO:0004872 receptor activity GO:0042048 olfactory behavior GO:0048036 central complex development GO:0048854 brain morphogenesis GO:0001964 startle response GO:0031987 locomotion involved in locomotory behavior |
| InterPro families | IPR000884 Thrombospondin, type 1 repeat IPR001627 Semaphorin/CD100 antigen IPR016201 Plexin-like fold IPR003659 Plexin/semaphorin/integrin IPR015943 WD40/YVTN repeat-like-containing domain |
| Orthology group | MCL11691 |
Nucleotide sequence:
ATGGTATCGGAACTGACAATATACTCTCGTATAGCGCGTGTATGTAAAAATGACTCGGGC
GGCCATCTTGTTATGAAAGACAATTGGAGCACCTTCCTCAAGGCACGTCTCAAGTGTCCC
GTGCCAGGGGACGTGCCGTTCTACTACGATGAGGTCCAGAGCGTTGAATATTTGGCCCAA
GAGAAAATTCTTGTAGCGGTCTTTACTACACCCACAAACAGCATAGCCGGTAGTGCCGTG
TGTATATACAACATGTCAGACATACAGATGTCCTTCGAGGGTCAGTACAAGGTTCAAAAC
TCACCGACCTCTACTTGGGAACCCCTTACACCAACAAGAGAAGCCAGGGAACACTTTAGA
TGCAACCCTGATCCCAGACCCCATCACAGTATGGAGTACCACAAGTATCATTTAATGTAC
GAGGCCATACAGCCGATATCGGGCGAGCCGGTGTACAAAGCCATACTAGAAAGATTCACC
CACGTCACAGTAGATGTTGTCACGACAAAAAATATCGCCAAGCAATTGGTCGTGTTCGTT
GCAACCGAGAACAGTGATGTGCTGAAACTGGCGATACTGCCGCGGTACGAGGGCGCCTGC
CTGGTCGAGATATGGAAACTCAAGGACTCTAGAGGCGGATACAACATACAGAACATGCAG
TTCGTGAAAGATACGATGTCGCTGTACATCGGCAGCGACACGGGCGTGCTGCGTCTATCG
AGCGAGCGCTGCAGCCGCTACAGGAGTCGGGCGGGGTGTGTGGGGGCCGCGGACCCGCAC
TGCGGCTGGGACGACGGCCGGGAACAGTGTGTGAAGAGTTCACAACACTTGAGAGGAGCT
TCCTTTGTGCAGTCCACAGCCAGCTGTCCCGCTGATAACAGTCAAGTGGATGGCGGCTGG
TCGTCGTGGTCGGAGTGGGAGCCGTGCATGCAGGATGAGTCCACGCACGTTGTGTACGGA
GACGACAAACCCGACATGTGCATGTGTCGCACCAGGAGTTGTGACAACCCTAGACCCGCC
AACGGGGGGCAACCCTGTCAAGGTGCCAGTATAGCAGTATCCAACTGCACGGTCCACGGC
GGCTGGTCGCCGTGGTCGGGCTGGTCGGAGTGCAGTTCGTCGTGCGGCATCGCCGTGAAG
TCTCGCCGGAGGTCGTGCACCTCGCCGGAACCCAAACACGGCGGCCGGGTCTGTGTGGGC
CTCGACGTTCAGGACGTATACTGTGCGGATCTGCCGCCCTGTCCAGATCCGGCCCTCGCT
TCGATAGACGGGTCGTGGTCCCCTTGGGGCCCGTGGTCGGCATGTACCGGCGCAGGTTGT
GGTGTGGGCGGGGGGACTCGCGAGCGACGCCGGGTCTGTGGGAGCCCCGCCCCTCGACAC
GGGGGAGCCGATTGCGAGGGGCCTCGCTTTGAAAGACAGTCTTGTGACCTACGACCATGC
GAGGTCAGAAAGGCGACCGCTTGGACCCCGTGGGTGCAAATACCAAGCAACACTTCTGAC
GGTAGTTACACCGAGAAGAGATTTAAGTTCCTATGTAAGGCGCCCGCACCGGAACAAATC
AGGTTATCTCTCGCCCGTGAGGAGGAACGCTATTGTAATCCTCGTGGGGTATGTACTAGT
ACACCTCCTGAGGAGGATCCGTCGTTTGACGGCTGGGGGCCCTGGGAGGCCTGGGGGGCC
TGCTCCGCTGTCTGCGGCGGGGGCCAGCAGCAACGGACACGTCACTGCCGAAGGCCCCCC
TGTACGGGGACCGCGGATATGCTGAGGCCATGCAATACGCATGCTTGTCTTGGCGAATGG
TCATGCTGGAGCGAGTGGAGCGAGTGTAGCGGTGGATGTGACTCCACCGGCCACCGAACC
CGCACCCGTATGTGCGTGTCGCCGCAGGGCTGTGTCGACGCCGGGGCCGCCCTGGAGAGA
CGCGCCTGTGTCAACACATGCACCGAATCAGAGAGTGGTTGGGGGGCCTGGGGGGCCTGG
AGTGAGTGCGAGGGCGGTGAGAGGGTGAGGCGGCGCAGCTGTGAGTCGGGGGCCTGCGTG
GGGGCCCAGCTGCAGGCGGCCAAGTGTGGAGACGATGATATGGATAATGAGTTATACGCG
ATGCCGGCATACAGTCAGAATGTTGAGAGCGCTTCCTTTGTAACAATGTCCAGCGAACCT
CTCGGTGTTGGGGGCATTGTTGGCTGTGTCGTCGGAGCTTTTGTTATGGGTTGTCTATTA
TGTCTGGGGGTGGTGGTGGCGTGTTACCGTCGTCCGTGGAGGTCGGCAGCGCGCGTGCCG
TCCAGTCCGCATTACATCACCGCTAAACAGAACAGCTATGTCACAGTGCCGCTTAAAGAT
GTGCCGCGTAAAGCTAAGCGCCAGCCATCATTCTCGGGTCTTGGCAACAGTAGTGGCATC
CTCGTTAAAAGCAATAACTTGTCTAACGCCAACCACAACAACACTATGGCCACCCCCAAA
CTGTATCCCAAGGCCATCGCCAATGAGTACGACTCAATGGGAACACTGCGGAGACATTCC
AACCAACCGAACAACAAAACTAATATTGATATTGAAGAGGATAAGTTCTATTGA
Protein sequence:
MVSELTIYSRIARVCKNDSGGHLVMKDNWSTFLKARLKCPVPGDVPFYYDEVQSVEYLAQ
EKILVAVFTTPTNSIAGSAVCIYNMSDIQMSFEGQYKVQNSPTSTWEPLTPTREAREHFR
CNPDPRPHHSMEYHKYHLMYEAIQPISGEPVYKAILERFTHVTVDVVTTKNIAKQLVVFV
ATENSDVLKLAILPRYEGACLVEIWKLKDSRGGYNIQNMQFVKDTMSLYIGSDTGVLRLS
SERCSRYRSRAGCVGAADPHCGWDDGREQCVKSSQHLRGASFVQSTASCPADNSQVDGGW
SSWSEWEPCMQDESTHVVYGDDKPDMCMCRTRSCDNPRPANGGQPCQGASIAVSNCTVHG
GWSPWSGWSECSSSCGIAVKSRRRSCTSPEPKHGGRVCVGLDVQDVYCADLPPCPDPALA
SIDGSWSPWGPWSACTGAGCGVGGGTRERRRVCGSPAPRHGGADCEGPRFERQSCDLRPC
EVRKATAWTPWVQIPSNTSDGSYTEKRFKFLCKAPAPEQIRLSLAREEERYCNPRGVCTS
TPPEEDPSFDGWGPWEAWGACSAVCGGGQQQRTRHCRRPPCTGTADMLRPCNTHACLGEW
SCWSEWSECSGGCDSTGHRTRTRMCVSPQGCVDAGAALERRACVNTCTESESGWGAWGAW
SECEGGERVRRRSCESGACVGAQLQAAKCGDDDMDNELYAMPAYSQNVESASFVTMSSEP
LGVGGIVGCVVGAFVMGCLLCLGVVVACYRRPWRSAARVPSSPHYITAKQNSYVTVPLKD
VPRKAKRQPSFSGLGNSSGILVKSNNLSNANHNNTMATPKLYPKAIANEYDSMGTLRRHS
NQPNNKTNIDIEEDKFY