New model in OGS2.0 | DPOGS202706  |
---|---|
Genomic Position | scaffold1503:- 4258-10183 |
See gene structure | |
CDS Length | 3867 |
Paired RNAseq reads   | 337 |
Single RNAseq reads   | 892 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA008386 (2e-22) |
Best Drosophila hit   | ND |
Best Human hit | mediator of DNA damage checkpoint protein 1 (7e-17) |
Best NR hit (blastp)   | Cytoskeletal protein Sojo, putative [Pediculus humanus corporis] (3e-30) |
Best NR hit (blastx)   | PREDICTED: im:7163673 [Danio rerio] (4e-33) |
GeneOntology terms    | GO:0005515 protein binding GO:0031573 intra-S DNA damage checkpoint GO:0005634 nucleus GO:0005654 nucleoplasm GO:0008022 protein C-terminus binding GO:0005622 intracellular GO:0006281 DNA repair GO:0007049 cell cycle |
InterPro families    | IPR000253 Forkhead-associated (FHA) domain IPR001357 BRCT IPR008984 SMAD/FHA domain |
Orthology group | ND |
Nucleotide sequence:
ATGGAGCTAACTCAAAAACTCGAGTGTACACAAGAAATATGTGCGAATAACTATGAAAAA
GAATTTCCTGAACAGATTGGCTTTTTGGGTATTTGTGGTGTTAAGTACCCTTTGAAGAAA
GGACCAAATAAGATAGGCAGAGATCCCGATACGTGCAATATTGTCCTTAATTTAAATTCT
ATATCGAGGCAACATGCGGTGATCAACATTTTAAACAGTTATGACTTCATGCTGATGGAT
TTAGATTCTGCAAACAAAACGAAACTAGCAGATAAAACATTACAAGCATATATTCCGCAC
CCAATTAAAAATGGAGATATGGTACAATTTGGCCAGGTGTTTGGTGTGTTCCGATTATTT
GAGGAAGACAATGATCTACCCATGACCCAAGCACTGGATGTACCAGAAACTCCTGTGAGG
AACCAGGCGGTTTATAAAGTTAATAACCTGATAACTACAATTCCAGAATCTCCAGATGTC
AGTGATAGGGATGACTCCTTCATTGTGGCCTCACAACCCAAACCAAATAATGTATTCAAA
AGTCCAAAGACCAACTTCATAAAATCATCTGGGAAAACAGTACATATAAAGCCTGTTGGT
TTCAATAAAATAGATAACGCCTATTGGAGTTCATCTAAAAAGTCCGATTCATTCAGCTTA
GAAACTGATACATCTAGAAATGATTCAGACATTTGTTTGAAAACTTCTGAAATTAATCAA
AATATTCATGAACAAGACACCCAATGTACTGGTTACAATAAAACAGACAATTCCATTTAT
GAAGCTGAAACACAAATAGACAATGTACAAAAATCAGTTCATAACTTGGAAACACAACTA
CTTGGAATCAATAATTTGCCAGAAGTATTCAAAATACAAGGTCAAGAAAATATCAACTTA
GATTTGTCTACAGAGAACAAAGAAAATGAGGATGTATATCAGTCTGACAAAGAGGTTTTA
TTACATAAAGCAATGGGTAGTGCTGTCAGAGATAATGAAAGTTGCAACAACAAAGATATA
TCTGATGATATAATATTATTTGATGAGATTGATAGTCCAGTAGGTGAAGATAACATTGAA
TCACAACAACTTCTCATACCTGAATTAGAAACGGAACATGTTGAAATAGTAGGAGACAGT
GAAAAGCCTTCAAACAAGGAGGAGGAGCCATCAAAAAGAAGAGATTCTGGAAGCTCCACA
GATTGTGAGGATATTTATTTCGCGCTAACACAGAATTTACCAGAAAAACGAATTGAAGAT
GATGAAACCGACTGTGAAGATGATCCTGAAATAATTGTTAAAGTAAATAAAGAACAAAAA
ACAGTGGAAAACTCTAACTTAGACGACGATCTAACAGACTGTGAAGATGATATTGAAAGC
AAAGCCCAAACAGATCCCGGCTTAGAGGATTTAGCTACGCAAATTGTAGAAGATGTTAGC
CATTGCAAAATAAACTCTTCGAAAACGACATCAGATGACCAACAGGGTCCAAATGAAATA
GACCTGGAAGATATGCCCACACAGATAATTAGTTACGAACCGCAGAATATTTACTCTGAA
GAAGTTGTCACTCCGTTTAAAGTTCCCGCTATATCTCCTATGAAACGTAAGAGAAAAGAA
CAGGAGCCAAAAGCACTCACAATTATTAATAATAAAAATATAACTGCCAACATAGAGAAT
GACGATGAGGAAAATTATTATGACGCAACGCAAAAATTATGGGACGATTTATGTACTCAA
AGGGAATCATCCCCCACATTATCTTGTGGAGCCAATAAGGATGTATTAGAAACACAGATT
AATAAAAACATTATTATTAATCCACCCGATTGTCAACCAGAGACATATGATATTGATGAA
AAAATTGATAGATTTGTAATGAATTTGACTAATACGGAGAAAACTTCAATGGTCGGTGCG
AAAACAGGCGTGGAATCCAAGAAGTCATCTAGTGATAGCTCTGATGTTGAAACAACACCG
AGGAAGTTAAATCCTCTTTCCTTTCTAAATACCGAGCTACCCAACACACAAGAAATAAAG
TTGTATGTAAAGGCAACCGGTGATACCTCACCGGAAACCTCTTTTGACTTAGATACAGAT
AGCTCAGATTGTGAACGACATAGAAAGAAAAGAAATACAAAGAATAAAATTGTTAAAAGA
TCAAATCTGATCACAAGGTTAGAGTCTGAGAAATCACCTGAAAGAATAATAAATCCCGTG
AGACAACCTGAGAATAAAATCAAGCACTCTAAAGACATCGATAACAAAAAACCTAAGAGA
AATACTGGATCTGACTTGTTAGGAAATGAAAATAATAACGACGGAAAACTAGTCACAGCT
AACACATCAGAAGTTAAAGAAAAATCGACAAGAAGCACGAGAAGTTCAGATATTATTGAC
AAAAAGGACAGTAAAGAATTAAATAAAAGCAAAGCAAGTTGTAAAAATACAAAGGAAAGC
AAAGCAAAAGGAATAACAGATAGCAAAGAAACTGCGAGAAGGGGACGCAAAAATAATATT
ACTATAGAAAAACAAAACAGCATCGTCAAAAAAACCACTGAGGGCGATATTAAAAATAAT
GTCACAGTTACGGACAGAGAACAGGCAAAAGAAAAAAAGGGTAACAAAAAATCCACAGAC
ACTAATGACAAAGAAAAACGTAACAGCAGTAGAAGTGCGAGTAAACAAACAAAATCAGAT
AATAACGAGCCCAAACTCCCACAAGCGAAAGGAGACTCAAACAGAAGTAGTCGCAGCAAA
AGCAGGCGAAAAGAAACTAATACGATCGACAAATTTCTATGTCCCACTCCTGTTATTGAA
GCTCAGAAGAAAAATGTTAGCAAAAGTAGAAGTACAGAAAAAGAAATCAAAAACACAGAG
CAGGAAAACAATGGAAAAGATAGAGGAAACAGAAGAAAAGATAGCAAAAGTACAGACAAC
ACAAGCAGAAATAGTGACAAGGTAAACAAAAACAAGGATATAGATACTAAAGAAAAGAAC
AGAACAAGTGCAGAGACGAGAAATCAAACAAGGAGTATGGAGAATAACAAAAAGGAAATA
CCGGTGGAATTAGAAGTTAGACGGAGCAAGAGGCAAAGAACGGCTAAAAGGAGCTTTGAG
ATAGAATCAAGGACATCGAAAACTAATCATGAACAGAGCACAGTGTATAATATCTCATCA
GAATCTGGTATTGACTCTCCCAACAAGCTAAAGAGACAGGCTAGTGATATCAGTCTACCG
AGCTCTAAGAAGACCAAAACGTGCAACGGTTCAAATATCACATTAAGGGCCACGCCTGCT
AGAAAGATTAAGACGCAGTACGTACTCTTTACAGCATTCCCATGTGACGAGGTCAAAGTT
AAATTGGAAAAGTTGGGGGCAGTTATTGTAACTGACATAATGAAATGTACAGTAGTCCTA
ACTTTAGAAATTAAAAGGACATTTAAGTTGCTCTGTGCTGTGGGTCTTGGTAAGCCGATA
GTCGGACCTCACTGGGTTCAGGCTTGTGTTGACACTAATATGATTGTTGATCCTTGGTTA
TATCTCATCAAGGACGAGAAAACTGAGAAGCGTTTTCAGTTCAATCTGGAGCGTATATTA
ATTGGTAAGAGACAATTTCTGAAAGGCTACAACGTGTCGTCAACGCCAAATGTAATGCCA
AGCCCTCCCGAGATGAAATTAATAGTGGAGTGTTCAGGCGGAACCTGGACAGCAGGCGGG
AAAAATTGGATATGTGTGTCCTCTAACACTGACAGAGCTCTATGGGACGGGCTCAAGCGC
AAGGGCGCCACTATAGTGTCAACGGAATTCGTTTTGGCGGGAGTTTTACGACAGAAAATA
GATATCAATAGAAATATACTGTTGTGA
Protein sequence:
MELTQKLECTQEICANNYEKEFPEQIGFLGICGVKYPLKKGPNKIGRDPDTCNIVLNLNS
ISRQHAVINILNSYDFMLMDLDSANKTKLADKTLQAYIPHPIKNGDMVQFGQVFGVFRLF
EEDNDLPMTQALDVPETPVRNQAVYKVNNLITTIPESPDVSDRDDSFIVASQPKPNNVFK
SPKTNFIKSSGKTVHIKPVGFNKIDNAYWSSSKKSDSFSLETDTSRNDSDICLKTSEINQ
NIHEQDTQCTGYNKTDNSIYEAETQIDNVQKSVHNLETQLLGINNLPEVFKIQGQENINL
DLSTENKENEDVYQSDKEVLLHKAMGSAVRDNESCNNKDISDDIILFDEIDSPVGEDNIE
SQQLLIPELETEHVEIVGDSEKPSNKEEEPSKRRDSGSSTDCEDIYFALTQNLPEKRIED
DETDCEDDPEIIVKVNKEQKTVENSNLDDDLTDCEDDIESKAQTDPGLEDLATQIVEDVS
HCKINSSKTTSDDQQGPNEIDLEDMPTQIISYEPQNIYSEEVVTPFKVPAISPMKRKRKE
QEPKALTIINNKNITANIENDDEENYYDATQKLWDDLCTQRESSPTLSCGANKDVLETQI
NKNIIINPPDCQPETYDIDEKIDRFVMNLTNTEKTSMVGAKTGVESKKSSSDSSDVETTP
RKLNPLSFLNTELPNTQEIKLYVKATGDTSPETSFDLDTDSSDCERHRKKRNTKNKIVKR
SNLITRLESEKSPERIINPVRQPENKIKHSKDIDNKKPKRNTGSDLLGNENNNDGKLVTA
NTSEVKEKSTRSTRSSDIIDKKDSKELNKSKASCKNTKESKAKGITDSKETARRGRKNNI
TIEKQNSIVKKTTEGDIKNNVTVTDREQAKEKKGNKKSTDTNDKEKRNSSRSASKQTKSD
NNEPKLPQAKGDSNRSSRSKSRRKETNTIDKFLCPTPVIEAQKKNVSKSRSTEKEIKNTE
QENNGKDRGNRRKDSKSTDNTSRNSDKVNKNKDIDTKEKNRTSAETRNQTRSMENNKKEI
PVELEVRRSKRQRTAKRSFEIESRTSKTNHEQSTVYNISSESGIDSPNKLKRQASDISLP
SSKKTKTCNGSNITLRATPARKIKTQYVLFTAFPCDEVKVKLEKLGAVIVTDIMKCTVVL
TLEIKRTFKLLCAVGLGKPIVGPHWVQACVDTNMIVDPWLYLIKDEKTEKRFQFNLERIL
IGKRQFLKGYNVSSTPNVMPSPPEMKLIVECSGGTWTAGGKNWICVSSNTDRALWDGLKR
KGATIVSTEFVLAGVLRQKIDINRNILL