Genomic Position | scaffold5472:+ 235-7506 |
---|---|
See gene structure | |
CDS Length | 1086 |
Paired RNAseq reads   | 865 |
Single RNAseq reads   | 3161 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA006308 (1e-30) |
Best Drosophila hit   | chaoptic (3e-72) |
Best Human hit | leucine-rich repeat-containing G-protein coupled receptor 4 precursor (2e-19) |
Best NR hit (blastp)   | cell surface protein chaoptin [Tribolium castaneum] (3e-85) |
Best NR hit (blastx)   | cell surface protein chaoptin [Tribolium castaneum] (2e-78) |
GeneOntology terms    | GO:0005886 plasma membrane GO:0007156 homophilic cell adhesion GO:0042051 compound eye photoreceptor development GO:0005515 protein binding GO:0042052 rhabdomere development |
InterPro families    | IPR001611 Leucine-rich repeat IPR003591 Leucine-rich repeat, typical subtype |
Orthology group | ND |
Nucleotide sequence:
TTACACGTAGACACTGGACATCCGCCATGCCTTTTCCAAGCTCTCTGTACGTGCTCTAAA
CCTGATGGTGATCTTGGTATCGTGACGTGCAACCACGTGCCCATCCTCAGGGTACCAGCC
GCCGTAAATAGCTCGAAAGTTTTCACGTTACAGTTGACTGGGAACAACATAAGAGATCTC
GAACCGCAGTTCTTCCAAGCCACAGGGTTATACAGGCTGGCTATAAACCAGAATCCGCTG
GAGAGTATACACGAGGAAGCTTTTTATGGCTTAGACAATACACTATGGGAGTTGGAATTA
ATGCAGGACAAGTTGACGGCTGTCCCGAGTCGAGCTCTGCGATATCTGCAAAAGCTGCGC
CTCCTTGATTTGACGGGTAACGAAATAACAGAAATTTCGGGTGACAATTGGCTCGGCTTG
GAGAACACGCTGCAAACCCTAATCTTAGCAAAAAATTCAATAGCCAGCTTGCCGTTAGAT
GCGTTCTCTGGATTGCCGATGCTGGAGACATTGGACTTACACGGGAACCATTTATCTGTA
ATTGATAGTGGAGTCTTCAGAGACGGTATGAGCAGACTCAGTAAGCTTCTTCTGGGAGAC
AACCAGCTAACGTTGATCCCTTATGAGGAGTTGTCTCCACTTCGGCAACTTCGAGTGCTT
GATCTTTCCAACAACCTTATCAAGCAAGTCCCTCCCGCCCATGAGTTAAATGGGGTTAAA
CTTTCATTGGATCAGCTTAACTTGGATCAAAATAGTATTCGAATTTTAATGCCTGGTTCG
TTTAAGTACTTCAACGTTCTGAACACCACTGTTCTTGATGGAAATCCCATATACTCCATC
AGGTTACATAGCTTGACATCATTGAAATTAGCCAATGGATTAGCAGATTCCGTAAAAATA
TTGCCATTTGAACCTTTGAAAGCACTTATAGAATTGCAGGATTTGGACGTTAGTAATAAC
AAATTGAGGAACGTCCCAGACACATCTTTCCACTTCTTATATAAGTTAAAAACATTAAAC
CTTCAAGATAATCTCATTGATCACTTCTCTAAAGGAACATTACAGGTAATTTTTTGTAAC
TTGTAA
Protein sequence:
LHVDTGHPPCLFQALCTCSKPDGDLGIVTCNHVPILRVPAAVNSSKVFTLQLTGNNIRDL
EPQFFQATGLYRLAINQNPLESIHEEAFYGLDNTLWELELMQDKLTAVPSRALRYLQKLR
LLDLTGNEITEISGDNWLGLENTLQTLILAKNSIASLPLDAFSGLPMLETLDLHGNHLSV
IDSGVFRDGMSRLSKLLLGDNQLTLIPYEELSPLRQLRVLDLSNNLIKQVPPAHELNGVK
LSLDQLNLDQNSIRILMPGSFKYFNVLNTTVLDGNPIYSIRLHSLTSLKLANGLADSVKI
LPFEPLKALIELQDLDVSNNKLRNVPDTSFHFLYKLKTLNLQDNLIDHFSKGTLQVIFCN
L