| New model in OGS2.0 | DPOGS209639 |
|---|---|
| Genomic Position | scaffold154:- 178848-180020 |
| See gene structure | |
| CDS Length | 1173 |
| Paired RNAseq reads | 26467 |
| Single RNAseq reads | 71833 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006704 (4e-100) |
| Best Drosophila hit | vasa intronic gene, isoform B (7e-32) |
| Best Human hit | plasminogen activator inhibitor 1 RNA-binding protein isoform 4 (1e-16) |
| Best NR hit (blastp) | PREDICTED: similar to vasa intronic gene CG4170-PA, isoform A [Apis mellifera] (9e-48) |
| Best NR hit (blastx) | PREDICTED: similar to CG4170-PA [Nasonia vitripennis] (5e-38) |
| GeneOntology terms | GO:0016442 RNA-induced silencing complex GO:0016246 RNA interference GO:0003729 mRNA binding GO:0005634 nucleus GO:0070828 heterochromatin organization GO:0005700 polytene chromosome GO:0005737 cytoplasm GO:0005703 polytene chromosome puff |
| InterPro families | IPR006861 Hyaluronan/mRNA-binding protein |
| Orthology group | MCL17994 |
Nucleotide sequence:
ATGGAGAATTCCTACGGTGTGGGGACCGATAACAGATACGCTCTTTTCTTGGACGATGAG
TCCGATCCTCTTGATGCGTTAAAAGCTCGAGAGCAAGCAAAAGAGCTCAAGAAAAAGACC
AAAGAGGCGGAAAAAGAGAACAAGGGGAAACCTGAGGCCAAACCTAAGGGCGGCAGTGTC
GTCACGAGGAAGGGCATCAAGGAAACTCAGAACGTGAAGTCTCAAGAAATTAAGAGTGGT
GAACAACAAAAGAACAAAGGTCCACCTCGGACAAACGATCGCAATTCGGAGCGGCCGCCG
CCTCGGCGTCGCGAGGATCGTCCTCAGAACGGAGCCGTCGAAGGTAAGGAGGGTGCGCGA
CCTCCTCGCAGGGAATTCGGTGACCGAAGGCCTAATTTTGAGCGACGTAACTTCAACGAT
AACTCTGAAGGAGGAGAACGTCGCGGTCCGAGGCCCCCACGTGAGCCGCGTGAAGGACAA
CGTGGTCCGCGACCGGGCTTCGATGGCCGAGGCAAGCGTGAGTTTGACAGACGGTCAGGC
TCTGACAAAACTGGCGTTAAACCGGTAGACAAGCGCGAGGGTGCCGGTCCTCACAATTGG
GGAACTATAAAGGACGATATCGATGAATTGAACAAAACCGGATCCGAAGGTGAAGTGGCC
GAGGAGAAAGCGCCGGACGCGACCGGCGCTGGCGACGGTCAGCAATCGGAGCCCGAGCGC
GCTCCGCCCGCCGAGGAGGAGCCCCGCGAGCTCACCCTGGACGAGTACAAGGCGCTCCGT
AACGCTCAACGCATGGCTCCACAGTACAATCTCCGGAAGGCCGGCGAAGGTGAGGATCTT
AGCCAGTGGAAGAATCTAGTTCTGCTGGAGAAGAAGAAGGAGGGGGGCGAGGAGGACGAC
AGTGATGAGGAGTACGACATCGCTGACTACCCCCAGCGAGTCGGACGTCAGAAACGCGTG
CTGGGCATTGAGTTCACTTTCAACGACACGGCGCGGCGCGGAGGCACCGGCGGCCGCGGG
CGAGGACGCGGACGCGGGCGCGGAGGGCGCGGTGGAGGGACGGGGGCCGGAGTGCCGCGC
GAGGAAGCTGCACCCGAGGAGCGGCCGGCGGCCAAGAACCAGGTCGCTCCGCCGAAGGTG
GACGACAGCAAGGATTTCCCTTCACTCAGCTAG
Protein sequence:
MENSYGVGTDNRYALFLDDESDPLDALKAREQAKELKKKTKEAEKENKGKPEAKPKGGSV
VTRKGIKETQNVKSQEIKSGEQQKNKGPPRTNDRNSERPPPRRREDRPQNGAVEGKEGAR
PPRREFGDRRPNFERRNFNDNSEGGERRGPRPPREPREGQRGPRPGFDGRGKREFDRRSG
SDKTGVKPVDKREGAGPHNWGTIKDDIDELNKTGSEGEVAEEKAPDATGAGDGQQSEPER
APPAEEEPRELTLDEYKALRNAQRMAPQYNLRKAGEGEDLSQWKNLVLLEKKKEGGEEDD
SDEEYDIADYPQRVGRQKRVLGIEFTFNDTARRGGTGGRGRGRGRGRGGRGGGTGAGVPR
EEAAPEERPAAKNQVAPPKVDDSKDFPSLS