New model in OGS2.0 | DPOGS201499  |
---|---|
Genomic Position | scaffold171:- 25898-32528 |
See gene structure | |
CDS Length | 1416 |
Paired RNAseq reads   | 1665 |
Single RNAseq reads   | 6603 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA002590 (4e-113) |
Best Drosophila hit   | myocyte enhancer factor 2, isoform B (1e-85) |
Best Human hit | myocyte-specific enhancer factor 2C isoform 2 (2e-55) |
Best NR hit (blastp)   | myocyte enhancing factor 2 isoform A [Bombyx mori] (0.0) |
Best NR hit (blastx)   | myocyte enhancing factor 2 isoform A [Bombyx mori] (7e-161) |
GeneOntology terms    | GO:0007498 mesoderm development GO:0007519 skeletal muscle tissue development GO:0005634 nucleus GO:0006366 transcription from RNA polymerase II promoter GO:0003702 RNA polymerase II transcription factor activity GO:0016202 regulation of striated muscle tissue development GO:0006355 regulation of transcription, DNA-dependent GO:0003700 sequence-specific DNA binding transcription factor activity GO:0030707 ovarian follicle cell development GO:0007507 heart development GO:0043565 sequence-specific DNA binding GO:0007520 myoblast fusion GO:0048747 muscle fiber development GO:0007496 anterior midgut development GO:0010468 regulation of gene expression |
InterPro families    | IPR002100 Transcription factor, MADS-box IPR022102 Holliday junction regulator protein family C-terminal repeat |
Orthology group | MCL11986 |
Nucleotide sequence:
ATGCAACAGAGAGAAGACTGCGAACCTTTGCCATGGCCACGCACACCATCAAAGCACATC
GCACAGAACAATGACATATTCAAGAATTTACACACATTGAGACAGGGAAGCACTCGCAAC
GCAACAGGCTCTAGAAATAAGGAAAATATAGCAGCTGTTGACGTCCGTAGTAGCCAGCCA
CCGGCACATTTGTCTCCCCCCGCTCCTATAACCCCCTCCAAGATTGCTGCCACCATGGGC
CGGAAGAAAATACAAATATCACGTATCACGGATGAACGGAATCGACAGGTGACTTTCAAC
AAACGCAAATTCGGAGTAATGAAGAAGGCTTACGAATTGAGCGTCCTCTGTGATTGTGAA
ATTGCTCTCATCATCTTCAGCTCCAACAACAAACTCTACCAATATGCCAGCACCGACATG
GACAAGGTTTTATTGAAATACACGGAATATAATGAGCCGCACGAGTCACTGACGAATCGC
AACATCATCGAGGCACTAACGAAGAAAGAGCATAAGAACGGAGTGATGTCACCAGACAGC
CCTGAAGCCGAACCAGAATATAACTTGACCCCAAGGACTGAAGCAAAGTATTCAAAGATT
GATGAGGAATTTCAAATGATGATGCAACGCAACCAACTCAATGGAAGCCGAGTCGGAGTT
GGTGTTCCTGGAACGAACTACAACCTTCCTGTCAGCGTACCCGTCGGAAGCTATGATCAG
TCCCTTTTGCAAGCTAGTCCTCAAATGCATACCTCTATCAGTCCACGGCCATCGTCTTCA
GAAACTGATTCAGTTTACCCGAGCGGCGCAATGCTAGAGATGTCAAATGGTTACCCGGGA
TCTGGCTCACCGTTGGGTGGAGGGTGCACTCCCTCCCCCTCCCCCGGACCAGCTCCCTCC
CCCCACCGACACCCGCACAAGCCCCACCATGCTCCGCCGCCGCATCATTCGCCCCGTCAC
AACAACTTACGCGTCGTCATACCCAGTTCCATGCCACCACCGCAAGATGATATATCTTAT
ACCGGAGAGACACCACTAAGCTATTCAGGACTCGGAAACTTCGGCGGACCACAGGATTTC
AGCATGAGCTCAGACATCGGCATAGGACTGTCATGGGGAGCGCACCAACTGCAGACACTA
CAACACAACAGCAGTCTGCCGGTGCTAGGCGGTACACCGCCTCCGGCCGCATCTCCTAGC
AACGTGAAGATCAAAGCCGAGCCAGTTTCCCCACCGCGTGAACATCTGCATCGTCCACCA
GCACCGCCAGCCCACCTCGCCGGCATCGATGGATCGGTGACTTCAAGTAACATGGGTTCG
CCAGCCGGGCAGGACATGAGGCATGCCAACACCGTCCCGCTAGACTACGAACAGCCTCAC
TCAAAACGGCCGCGGATCGAAGGCTGGGCCACATAG
Protein sequence:
MQQREDCEPLPWPRTPSKHIAQNNDIFKNLHTLRQGSTRNATGSRNKENIAAVDVRSSQP
PAHLSPPAPITPSKIAATMGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCE
IALIIFSSNNKLYQYASTDMDKVLLKYTEYNEPHESLTNRNIIEALTKKEHKNGVMSPDS
PEAEPEYNLTPRTEAKYSKIDEEFQMMMQRNQLNGSRVGVGVPGTNYNLPVSVPVGSYDQ
SLLQASPQMHTSISPRPSSSETDSVYPSGAMLEMSNGYPGSGSPLGGGCTPSPSPGPAPS
PHRHPHKPHHAPPPHHSPRHNNLRVVIPSSMPPPQDDISYTGETPLSYSGLGNFGGPQDF
SMSSDIGIGLSWGAHQLQTLQHNSSLPVLGGTPPPAASPSNVKIKAEPVSPPREHLHRPP
APPAHLAGIDGSVTSSNMGSPAGQDMRHANTVPLDYEQPHSKRPRIEGWAT