| New model in OGS2.0 | DPOGS207903 |
|---|---|
| Genomic Position | scaffold1143:- 2420-14862 |
| See gene structure | |
| CDS Length | 1917 |
| Paired RNAseq reads | 64 |
| Single RNAseq reads | 244 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011558 (2e-87) |
| Best Drosophila hit | prominin, isoform C (2e-32) |
| Best Human hit | ND |
| Best NR hit (blastp) | prominin [Culex quinquefasciatus] (8e-50) |
| Best NR hit (blastx) | prominin [Culex quinquefasciatus] (6e-44) |
| GeneOntology terms | GO:0042052 rhabdomere development GO:0003674 molecular_function GO:0016021 integral to membrane |
| InterPro families | IPR008795 Prominin |
| Orthology group | MCL15666 |
Nucleotide sequence:
ATGAGTCTATTTGTTATAAGACGAGAGGCAATAAAAGTGGAGTCCACATTTTTAGTAATC
ATCGTACTCTTCGGATGCTTAGCTTTGGTATTACCATTGTATCTTTTTATACTTAGTCTA
ATATCCCTCTTCTCAAAATCTAAATGCACTGATGAAATCGAATCCGGAACCTTATTTCTT
GAACAAGAGAGACCAGATTGCCATGACAGAATACTTGTGACTTTTACCTTCCTGTTTCTT
CTAATATGTTGCGGTTTAATATCGGGCATGGTGTTAAGTAACGAGCAGTCCCGCATAGCC
ATATCGGAGAGTCGCAACGTATTTAGCTGTGCATGCGCCGATGTAGCAGCTTGGCTGTCT
TCAGCGGCTCAAGAGTTACATCACAGCCTCGTACCACCAGTTGATATGGTTTATTATGCT
TACAGTGAAGATTTGAGGGACGTAGAAAGACTTCTTGGTGAACCAATACAACAAGCAATT
GCATCTGAAAGCGGTATTGATCTAGTTCTAGATTCCTTAGCAGATATAATTACAGAAAGT
GAAGATTTATCAACCAAAGTGTCAGCACTTCGAGACATTTGCGTTAAAGCTGGTCTTCTT
GCAAATTCAGCATCAGAGAGGATAATGGATTTAATACAACAGTTGGATAATCTTAAAAAA
CATTGTATTGAAAAAGACGCTCCCCTCTGTGACACTTTAAATACAAATTCTTTACATATA
ACTATGAAGTTGGATTCTGTGTTTGCCTGTCAAATTCTCTGGGATTCTCCACAATACAAT
ACGTTGTCATCATTACTAAATAGGCCATCGCCTCTTCTAACAGATAATATGGGTATCTTT
GATGCTTTGTTTCAAGATCTTGACAATGTTACTATAGAAGTGTCAGTCAAAGACGTTCTG
AGAGAATGTGAAAAGAATGAACCCGCCTACGTTGTGTTCCAGTTAGAAAAAATACTAGAC
GTGAATAAGGAGACGTCTTACTTTGAGTGGGACGAACTACAAGATGACTTGAAAAGATTA
TCCGCTTCTATAGATGTTGGTTTCTTGAAGACGATATCAGATAACTTCAATAAGTTACTC
AATAGGATTCTCGTTATATCAGACGTCAATTTGACGAAATATAGAATGGAATATAACGGA
CCCGTGGTAGGAAAGGATTTGCCTTCCTTTGTAGATCAACTGGAAAACGTTGCGATTCAA
GTAACAGATTTAAATACAGCTGGAAGATTAGAGACTCTAGCGACGAGGACTCAAAGACTT
CATTTATCGAACATAAAGCCACTAGAACATCTGCGAACAGAACTAGTGTTCAAACTGACC
GAACTTGAATTGCAAATGATGCCTTTTAGGCGGAAATTAAACATCTCATTAAGTCATATC
CACACAGCGCAGTTTTATATTGATAATCAAGGAGACGTCATTGCTCAAAAGAAACTGTCA
ACGTTCATTACCCGTCTTTTGTCACACACGGCCGGTTGGCGAACGCACGTGTTAGACGCA
GCGGGACAACACGCCGGTCGCTGTCGACCGCTCTATGATGTGTTCGCGGCAGTCAGATCG
CTCGTGTGCACCAGATATGTTTCTTCATTGCATGGCTGGTGGTTCTGTGGCTTTTTGTTG
GGATTTATCTGGTGTGCAGTGTTGACACCGCTTTGCGTTAAACTGTGGAGAACATACAAT
AAAAAATTAAGAGCTCTGGATACATTGACCTTAACACATTTAGGGAACCTGGTACACCAG
CGACAGCCCCCTGCGACGACAGTGGCTGGAACACCCCCGGGCCTCCACCACCACCAAGAA
ACGATAGTTGGTGATATCACAGACGTAGACAGTGCTTTTAGCATGGATTCCTTTGAAAGA
TACAAAATGAATAAAGCTAATGGTAGCACAAAATTTTATGACGAGGATTACGATTGA
Protein sequence:
MSLFVIRREAIKVESTFLVIIVLFGCLALVLPLYLFILSLISLFSKSKCTDEIESGTLFL
EQERPDCHDRILVTFTFLFLLICCGLISGMVLSNEQSRIAISESRNVFSCACADVAAWLS
SAAQELHHSLVPPVDMVYYAYSEDLRDVERLLGEPIQQAIASESGIDLVLDSLADIITES
EDLSTKVSALRDICVKAGLLANSASERIMDLIQQLDNLKKHCIEKDAPLCDTLNTNSLHI
TMKLDSVFACQILWDSPQYNTLSSLLNRPSPLLTDNMGIFDALFQDLDNVTIEVSVKDVL
RECEKNEPAYVVFQLEKILDVNKETSYFEWDELQDDLKRLSASIDVGFLKTISDNFNKLL
NRILVISDVNLTKYRMEYNGPVVGKDLPSFVDQLENVAIQVTDLNTAGRLETLATRTQRL
HLSNIKPLEHLRTELVFKLTELELQMMPFRRKLNISLSHIHTAQFYIDNQGDVIAQKKLS
TFITRLLSHTAGWRTHVLDAAGQHAGRCRPLYDVFAAVRSLVCTRYVSSLHGWWFCGFLL
GFIWCAVLTPLCVKLWRTYNKKLRALDTLTLTHLGNLVHQRQPPATTVAGTPPGLHHHQE
TIVGDITDVDSAFSMDSFERYKMNKANGSTKFYDEDYD