Genomic Position | scaffold54:+ 34767-48846 |
---|---|
See gene structure | |
CDS Length | 2439 |
Paired RNAseq reads   | 243 |
Single RNAseq reads   | 620 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA011022 (0.0) |
Best Drosophila hit   | suppressor of variegation 3-3, isoform B (2e-107) |
Best Human hit | lysine-specific histone demethylase 1A isoform b (3e-120) |
Best NR hit (blastp)   | lysine-specific histone demethylase, putative [Ixodes scapularis] (4e-146) |
Best NR hit (blastx)   | PREDICTED: similar to Lysine-specific histone demethylase 1 (Amine oxidase flavin-containing domain protein 2) (BRAF35-HDAC complex protein BHC110) [Apis mellifera] (2e-135) |
GeneOntology terms    | GO:0016577 histone demethylation GO:0003824 catalytic activity GO:0005634 nucleus GO:0045449 regulation of transcription GO:0055114 oxidation reduction GO:0008152 metabolic process GO:0016491 oxidoreductase activity GO:0050660 FAD binding GO:0005488 binding |
InterPro families    | IPR011991 Winged helix-turn-helix transcription repressor DNA-binding IPR006207 Cystine knot, C-terminal IPR007526 SWIRM IPR002937 Amine oxidase IPR004133 DAN IPR009057 Homeodomain-like |
Orthology group | MCL15201 |
Nucleotide sequence:
ATGGCTTTTTTTAGCAAAACCATAGCAATTTGCATTTTGGAAGTTTTATTTCTTCTTACA
TTAAAGTGTTATGCAGATGAAAATTGTGAAACTCTTCCAACAGAAATTCACGTAACAAAA
GAGGAATATGACGATATGGGAAGTTTAGTGAGATCTTGCAGCGGAGAAGTTAATGTCAAC
AAATGTGAAGGGATATGCAACAGCCAAGTTCAGCCATCAGTTGTTACACCCACAGGCTTC
CTGAAGGAATGTTTCTGCTGCAAAGAGAATTACCTAAGAGAACGTCTGGTAACACTAACT
CATTGTTATGATGCCGATGGCTTGAGACTTGTTGATGAAGACCGTGCTATAATGGAACGC
GTTGTGATAATAAAGCTCACGGTTCCTTGGGAAACCAACATCCCCAAAGACCATGTCATC
AAGGTCAACAAGTTTTACGAGCTCACTAACGAGCTCACTAACGAACTCACTAAGAAAAGG
CTCCTCGTAAATTTGTACATGGTAGAAGTAGGAAAGAGTGGTATAACAGCTAAATCTCTC
TACAACCTGCTAAAAGATTTGGGAATGCCAAGGACTAACGTCAGTTCATCAGTCTTGGAA
CGTGCGTCGAAGGCACTAGTAGGAACAAAAGACGTTAATGGGCAAGAAATACAATTGCCT
CCTGGTCAAGAGTGTCAAATGACTCCCGTAATACATGTTCTTCAACACCCTGGGTGCGTT
CCGAAACCGATTCCATCTTATGCTTGCATTGGAAAGTGCACAAGCTATGTACAAGTGTCT
GGAAGTAAAATTTGGCAGATGGAACGTTCTTGCAATTGTTGCCAAGAATCTGGAGAACGA
GAAGCATCTGTGGTTCTTTTTTGCCCAAAAGCAAAGAGCGAGGAAAAGAGATTCCGCAAG
GTATCTACAAAAGCTCCTTTGGAATGCATGTGTCGTCCTTGTGGCAGCGTAGAAGAAAGT
TCTATCACAAATTCGAGTCCAACGTCTGTTACTGGACGGCGGGAATCATCTTCCAGTCGG
ACTGTGGATTCAAAAAAAGAAGACAAACCAATTATTATTGAAGAAACCAAAAGTGAAGAT
ATTGAAGAAGTTAACTACAAAGATATGTTAAATAGCTTGGAAGGTGCTGCATTTCAATCT
AGACTACCATTTGATAAAATGTCTTCATTAGAGGCCGAATGTTTTTCGGATTTGCAAGGA
GCATCAAGCCTTGCACTTGTTCAAATAAGAAATCGAATATTGAAACTTTGGTTTGAAGAT
CCTAAGAAACAGCTCACTCAAGAACAGTCCGTTCAAAAAATGGAACCACCATACAGTGCA
GATCCTGCCTTAGTGATGAGAACTCATGCTTTTCTGGAACGACATGGTTTTATAAATTAT
GGTATTTATGAACGAGTAAATCCTATTCCATCACCACCAAAGGGTAAACAAAGACCCAAG
GTCATAATTATTGGTGCAGGAGTATCAGGCTTGGCAGCTGCACGTCAGTTGCAATCCTTT
GGATGTGAAGTAGTAATATTGGAAGGGAGAGACAGAGTTGGAGGCAGGGTTGTCACTTAC
CGGAAGGGACCTTATGTTGCTGACTTAGGAGCAATGGTGGTAACTGGATTGGGTGGTAAT
CCTGTTACAACGTTGTCAGTACAAATGAACATGGAGTTGCATAAGATAAAACAAAAATGT
CCATTGTATGAAGCGACCGGTAATCAAGTCCCTAAACATAAGGATGAAATGGTTGAGCGT
GAATTCAATCGCTTGCTGGATGCTACCTCATACCTATCACATCAAGTAGACTTTAATTAT
TACAACGATACTCCCGTGTCTTTGGGACAGGCTTTGGAATGGGTCATTAAATTGCAGCAA
AAGAGTGTTAAACATAAACAGATTCAACACCTTAAAGCATTGATAACCTTGCAAGAGAAG
CTAAAGAATAATATCAACAAGATGTCAGATATAAACGAACTCCTTAAGTCTATGAAATCT
GAGAAGGAGACGTTGTTGGCTGATCGCGAGAAGGTAGCGTCTGGAGACGCTAGTATCTTG
CAGGAGTTTAATCTTAGAAGATTAAACCGGGAGATGAATCTGCTGTGTAACGAGTATGAG
ACGCTCACCACACAGAATAATACTATAGAGGATAAGTTGGTGCAGTTGGAATCTAATCCG
CCGAGTTCGGTGTACCTCTCGGTTCGAGATCGTCAGATTCTTGACTGGCATTTCGCTAAC
CTGGAGTTCGCGAACGCAACGCCTTTAGGAAACCTGTCGCTGAAGCACTGGGACCAGGAC
GACGACTTCGAGTTCACTGGGAACCATCTAACAGTTCTTCAAAATTTACGACATCGTTGT
CATTTGAAGCGAGCTTTTGCATCTCGGCAATCTGTGAAGGGTATGGAACACGAGGACATC
AATCTGGTTGCTGCGAAGGCGTGGGGCGTGGATGAATAA
Protein sequence:
MAFFSKTIAICILEVLFLLTLKCYADENCETLPTEIHVTKEEYDDMGSLVRSCSGEVNVN
KCEGICNSQVQPSVVTPTGFLKECFCCKENYLRERLVTLTHCYDADGLRLVDEDRAIMER
VVIIKLTVPWETNIPKDHVIKVNKFYELTNELTNELTKKRLLVNLYMVEVGKSGITAKSL
YNLLKDLGMPRTNVSSSVLERASKALVGTKDVNGQEIQLPPGQECQMTPVIHVLQHPGCV
PKPIPSYACIGKCTSYVQVSGSKIWQMERSCNCCQESGEREASVVLFCPKAKSEEKRFRK
VSTKAPLECMCRPCGSVEESSITNSSPTSVTGRRESSSSRTVDSKKEDKPIIIEETKSED
IEEVNYKDMLNSLEGAAFQSRLPFDKMSSLEAECFSDLQGASSLALVQIRNRILKLWFED
PKKQLTQEQSVQKMEPPYSADPALVMRTHAFLERHGFINYGIYERVNPIPSPPKGKQRPK
VIIIGAGVSGLAAARQLQSFGCEVVILEGRDRVGGRVVTYRKGPYVADLGAMVVTGLGGN
PVTTLSVQMNMELHKIKQKCPLYEATGNQVPKHKDEMVEREFNRLLDATSYLSHQVDFNY
YNDTPVSLGQALEWVIKLQQKSVKHKQIQHLKALITLQEKLKNNINKMSDINELLKSMKS
EKETLLADREKVASGDASILQEFNLRRLNREMNLLCNEYETLTTQNNTIEDKLVQLESNP
PSSVYLSVRDRQILDWHFANLEFANATPLGNLSLKHWDQDDDFEFTGNHLTVLQNLRHRC
HLKRAFASRQSVKGMEHEDINLVAAKAWGVDE