New model in OGS2.0 | DPOGS200450  |
---|---|
Genomic Position | scaffold4328:+ 44-4678 |
See gene structure | |
CDS Length | 1158 |
Paired RNAseq reads   | 356 |
Single RNAseq reads   | 822 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA011230 (2e-106) |
Best Drosophila hit   | CG3709 (2e-35) |
Best Human hit | putative tRNA pseudouridine synthase Pus10 (6e-41) |
Best NR hit (blastp)   | conserved hypothetical protein [Pediculus humanus corporis] (1e-66) |
Best NR hit (blastx)   | conserved hypothetical protein [Pediculus humanus corporis] (1e-54) |
GeneOntology terms    | GO:0016853 isomerase activity GO:0008033 tRNA processing |
InterPro families   | IPR020103 Pseudouridine synthase, catalytic domain |
Orthology group | MCL15740 |
Nucleotide sequence:
ATGATCATAGTTAATTCTCTCACTCCATTAAAGGAAGCCTGGAAATGGTCGTTTGGTACA
CATTTATCGAGACACATCCATAAAACTCTGGACTCGGGAGCCATTTCTCCGTTGTTGGTC
ACACTGAATATTGACTATGATGATGATATACAGGAATTGGAGATCCTCAAGAAGGTTTCA
CCGCAGCTGTTCGAAGAGAGAAGCAGGCAGAGGAGAAGATTTGCTACAGAATTCACTCGT
AGATCAGTCGAACAGGCGCTAGAGACCGCCACGCTGTCCTCTTTCCGTGCGGCGGGTGAT
GCTCTATCCCGGGTTAGCTCTAATGCACACTGCGTTAGTGTCATATGCACACACGCGCCC
ATTTACGTGTGCGGGAGGTATGTAAAGCTGAGTAGAAACCTTCCCCAATCTCCATGGGTC
TTGGATGGTAAGAGGGTCCTGCCGTCGTCAGTGCAGGAGATAATATTTGGACCCATAGCC
AAATTTTACAATTTCAGCGATGTTGACTGTGAGGGTAGATTGAAATTTATAGCAGCCGGT
AGAGAGGACGTTGATGTGAGGTGCCTGGGTGACGGCAGGCCATTTGCTATTGAGATAACA
GATCCCAAGCGAGAGCTGACATCTGAAGAATTGAATGAAGCCTGTGACATGATATCTACA
AGTGAGGAGGTGGTTGTTAAGAAACTTGTGCCCATCAATAGAGAGGACCTCGCGTTACTG
AAGAAAGGGGAGGAGACTAAGAGCAAGACTTATGAGGCGTTGTGCATCAAACTGACTCAC
TCCAAACATGATGATTGCCCTCCAGACAGTCCGATAACAGTGACGCCCACAGACTTGCAA
CTGATTAACGACTATAAGGAATCGGATGATGTAACGATGACGATATCACAGAAGACGCCT
CTTCGAGTACTACACCGACGACCTCTCCTGGTCAGGAAAAGAGAGATTCTGGAAATGTCC
GCTGTGCCTGTACCCGAACATCCTCAGTTGTTTCGTTTGTTTGTCCGCACGTCCGCGGGG
ACTTACGTCAAGGAGTGGGTGCACGGCGAGTTGGGGCGGAGCACTCCGTCCTTAGGAGAC
GTGATGGGATCGCGAGTAGACCTGCTGGCGCTGGACGTTACAGCTGTACATTTACAATGG
CCGCCAGTCAAAGAATAA
Protein sequence:
MIIVNSLTPLKEAWKWSFGTHLSRHIHKTLDSGAISPLLVTLNIDYDDDIQELEILKKVS
PQLFEERSRQRRRFATEFTRRSVEQALETATLSSFRAAGDALSRVSSNAHCVSVICTHAP
IYVCGRYVKLSRNLPQSPWVLDGKRVLPSSVQEIIFGPIAKFYNFSDVDCEGRLKFIAAG
REDVDVRCLGDGRPFAIEITDPKRELTSEELNEACDMISTSEEVVVKKLVPINREDLALL
KKGEETKSKTYEALCIKLTHSKHDDCPPDSPITVTPTDLQLINDYKESDDVTMTISQKTP
LRVLHRRPLLVRKREILEMSAVPVPEHPQLFRLFVRTSAGTYVKEWVHGELGRSTPSLGD
VMGSRVDLLALDVTAVHLQWPPVKE