| New model in OGS2.0 | DPOGS210419 |
|---|---|
| Genomic Position | scaffold345:- 35923-39969 |
| See gene structure | |
| CDS Length | 2865 |
| Paired RNAseq reads | 106 |
| Single RNAseq reads | 259 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA002751 (0.0) |
| Best Drosophila hit | CG13708 (1e-50) |
| Best Human hit | leucine-rich repeat-containing protein 49 isoform 2 (3e-33) |
| Best NR hit (blastp) | PREDICTED: similar to CG13708 CG13708-PA [Tribolium castaneum] (1e-165) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC009123 [Tribolium castaneum] (1e-87) |
| GeneOntology terms | GO:0005515 protein binding |
| InterPro families | IPR003591 Leucine-rich repeat, typical subtype IPR001611 Leucine-rich repeat |
| Orthology group | MCL14648 |
Nucleotide sequence:
ATGCCTATAAAGTATAACCGTGGAAATGTAAGAAAAATTGGTTTTCGTACCAGAGGTATA
TTAGCACAATCCCTTGATGTCAGCGCTCCACGTGTGGACTCTGGAGCAGGAGGAGATGGT
AGGTTATTTCTACAAATTCGACCTGCTCTGGCTGATCCACGTCATGCTGTATTACAAAGA
TCTAATTCAACTTTGTCGGGTAACTCATATTTATGCAAAGAAGATCCTAAAGACGACAGC
AATGGACTACAGGCTGTTGGAGAAGGCAAAGTACAATTATCACGCACCCCACAGGAAAAA
GACCGTCTCCCGGATAGGATTAGTCTTGATAGACGGGGTCTCTCATCAATACCTCATATC
GTGGGCGAGCCAGGCTTGCGACTGCTCTCCCTACAACATAATTTGATTAATACCCTTTCT
GGTCTGTCACCGCTTGATTTAAGTAAATTAGTTTTTCTAGATGTCTACGACAACCAGATC
GATAAAATATCATCGCTTGATAGACTCTTCAGCTTAAGAGTACTACTTATGGGAAAGAAT
AGAATAAAAAGAATTGAAGGATTATCCAACCTTATAAAATTGGAGGTTTTGGATTTACAC
GGTAATCGGATAATTAAAGTTGGCGGATTATCGAATCAGAGCGAATTAAAGGTGCTCAAT
TTAGCGGGTAATCAGATCAAAAGTATGGCACCATCAGATCTTCAAGGCCTGATCTCGTTG
AGAGAGTTAAACTTAAAACGTAACCGCTTAAGGAAACTACTCGGTTTTCAAAACACTCTA
AAGCTACAGAAGTTGTATCTTGGAAATAATGATTTGCAAAGTATCGAAGACGTCGCTTCA
TTGGCTGAAGCAACGTCGCTAGTGGATGTATCTCTGGACGGAAATCCGGTAGCATTGGGC
GGAGACTGCACGCCGTTTCTAGTTTCCTATCTCCCCAATCTAGTTACGTTGACGAACATG
CATGTTAGTGAGCAGGTACGACAAGCAGCTATGGCCTGGCGCAGTAACAAGGAAGCAGCT
CACGCAGCGTACTGCGCTCTCAGTGGCTCCGCGCAACAAGCCGCTAGGAGAGACCAAATT
ATACATAACGCAAGAACTAATTGGGAACTACTTAGATCAGAAAATAAGTGTTTTATTTCC
GCCACAACGCCAACAAAACAAAATGAAGATGAAAAACAAATTGAGCCCCGATCGTCTAAA
GGTACAAAGAATGATGCAACACAAACAGTGGAGACAGTCTGCACTCCGGATCTAATAGCT
TCAACTCAACACCTCGAGGTTCAAGAACCCAACAAAGGCAATAGAAGTAATAGCGAAATA
AAGACAAAAACTATTCATGATAGTACAAATTCAAAATCAGTGCCCACTAAGAAACTCCAA
CGAAGTTCAACTGCCCGGAAGCCATCTGAAAGACGAGTGAACTTCTCAGAAAGGAGCGCC
TCCCAAGAAACGGACGCCTCGCACTCAACATCCACCAGCAGCGATTTGCGTCTCCCTCCG
ATCTTACTGCCAATAATATCATCCTTGGAAAATGTTAAGCTAACAGATAGTTCCGAACCT
ATACTCAAAAGGTGGGAGAGTATATCTAGCGTAGAACCAGTTGGAGATTCGTCGTTTAGC
TCCCTACAATCATCAACCAGTGACAGCGACGAGGAGACCATTAAGAGACAATTCCGTAGA
GTCCCAACAGTATTGAAGAGGCGTGAACATTTTAGCACGGTGCGATCAAAATCAGTCTGC
GATCCAGAAAGCAGAAGAGTTAAGACAAGCAAAAATGTTGACAGTGAAAACGCTAGTAAT
ATATCTTCTGGTACGAATTTCTTTTCTGTTGGCACATCCTCAACATCTGGAAGTGATAAC
AATAGTAAGACTCTTAAGCGGCAAGGCTCATTAAATGGTAGACCGAACAGAAACATCCGC
AGCGCCACAATAACGAGAAGAAGTGAGCGCGCTTCCTCAGCTCACAGAGCATCCACGGCC
AGAGCCAAGTCAACGAAAGCTATAGCCAACATGAAGTACTCGGAACCAATAAAGCCAGTA
CCACCGAAGGACCGAGAACAAGGAGTCGATTATCTGATAGAAGTCAGTGAAGGCGTTGTC
AGTGCGTGGGGCGCGGGAGCGGTCAGACGACTAGCTAGAGACTGGGAATGGGAGAAAGCG
AAGACTGTCAATCATGCAGCTTTCCATTACGTACATTTTAATGCTGTTGCGCAATGCCTA
CCGGAACTGAAAGCCAAGTTTCCAAACGTCACTTCCTTATCTGTGCGGGCGACCGGTTTA
CAGAATTTGGGCCAATTACACGCTCTGGCTGAACTACGGGGACTGACATCGTTAACCGTT
ATGCCGGAGGGTAACCCTATATGTGTCAAAACATGGCGGGAATACTCTATATATAGACTT
GCCCATTGGGGCCTAAAAGAGATTAATAGTGAAACGGTGACGGATGAGGAAATCAAATCT
GCCAATGCAACGTATGCTGGCCTCAGTGATGTTGTACTCCGTGCGCTTCCAGACGCTCCT
TTACAACCATTACTATCAAGATTAGGTAAAAGTAGGAACAGTACGATCAGCGCCAAGGCC
TGGCTGAGGGCTGCGGATCCCGCATTAAGAGACGTTATCGCCAAAGAGGCTTTGCAATAT
AAGAAAAGTCACGTGTCACAGGAGGATATGACTTGGCGGGTGCGCGGTCGCGGTCAGTTA
TCGCACGCTATAGATCTAGCGTGTGGGGCCGCCATTAGACTAAGAACACTCGAATTACAA
TGGCCGACGATTTTCGTTGAAATGATCGAGGAAGTGTTACAAGATTTTTCTGACATGGAA
AATCATGTTAAAGAACAAATGCGTATGCTTATGGATACATTATAA
Protein sequence:
MPIKYNRGNVRKIGFRTRGILAQSLDVSAPRVDSGAGGDGRLFLQIRPALADPRHAVLQR
SNSTLSGNSYLCKEDPKDDSNGLQAVGEGKVQLSRTPQEKDRLPDRISLDRRGLSSIPHI
VGEPGLRLLSLQHNLINTLSGLSPLDLSKLVFLDVYDNQIDKISSLDRLFSLRVLLMGKN
RIKRIEGLSNLIKLEVLDLHGNRIIKVGGLSNQSELKVLNLAGNQIKSMAPSDLQGLISL
RELNLKRNRLRKLLGFQNTLKLQKLYLGNNDLQSIEDVASLAEATSLVDVSLDGNPVALG
GDCTPFLVSYLPNLVTLTNMHVSEQVRQAAMAWRSNKEAAHAAYCALSGSAQQAARRDQI
IHNARTNWELLRSENKCFISATTPTKQNEDEKQIEPRSSKGTKNDATQTVETVCTPDLIA
STQHLEVQEPNKGNRSNSEIKTKTIHDSTNSKSVPTKKLQRSSTARKPSERRVNFSERSA
SQETDASHSTSTSSDLRLPPILLPIISSLENVKLTDSSEPILKRWESISSVEPVGDSSFS
SLQSSTSDSDEETIKRQFRRVPTVLKRREHFSTVRSKSVCDPESRRVKTSKNVDSENASN
ISSGTNFFSVGTSSTSGSDNNSKTLKRQGSLNGRPNRNIRSATITRRSERASSAHRASTA
RAKSTKAIANMKYSEPIKPVPPKDREQGVDYLIEVSEGVVSAWGAGAVRRLARDWEWEKA
KTVNHAAFHYVHFNAVAQCLPELKAKFPNVTSLSVRATGLQNLGQLHALAELRGLTSLTV
MPEGNPICVKTWREYSIYRLAHWGLKEINSETVTDEEIKSANATYAGLSDVVLRALPDAP
LQPLLSRLGKSRNSTISAKAWLRAADPALRDVIAKEALQYKKSHVSQEDMTWRVRGRGQL
SHAIDLACGAAIRLRTLELQWPTIFVEMIEEVLQDFSDMENHVKEQMRMLMDTL