| New model in OGS2.0 | DPOGS214189 |
|---|---|
| Genomic Position | scaffold1800:+ 11628-13498 |
| See gene structure | |
| CDS Length | 1317 |
| Paired RNAseq reads | 165 |
| Single RNAseq reads | 341 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006233 (1e-171) |
| Best Drosophila hit | CG1434 (5e-140) |
| Best Human hit | tRNA-dihydrouridine synthase 2-like (6e-102) |
| Best NR hit (blastp) | PREDICTED: similar to tRNA-dihydrouridine synthase [Tribolium castaneum] (5e-166) |
| Best NR hit (blastx) | PREDICTED: similar to tRNA-dihydrouridine synthase [Tribolium castaneum] (7e-161) |
| GeneOntology terms | GO:0017150 tRNA dihydrouridine synthase activity GO:0008033 tRNA processing GO:0055114 oxidation reduction GO:0005622 intracellular GO:0050660 FAD binding GO:0003725 double-stranded RNA binding |
| InterPro families | IPR001159 Double-stranded RNA-binding IPR001269 tRNA-dihydrouridine synthase IPR013785 Aldolase-type TIM barrel |
| Orthology group | MCL13868 |
Nucleotide sequence:
ATGGTTCGTATTGGCACCTTACCCATGCGTCTGTTAGCTCTACGCTTTGGTGCAGATATA
GTGTATTCTGAAGAATTGATTGACTGGAAATTTTTACGTTCTAAACGCAGGTATAATGAG
ATCCTACATACAGTTGATTTTGTTGATCAAACGGATGGGACCATAGTTTTTCGTACAAGT
GAGGAAGAAAAAGAAAAAGTTGTTCTCCAGCTTGGCACATGCAGTCCTGATAGGGCTTTG
AAGGTTGCTAAACTAGTTGAAAAAGATGTAGCAGCTATCGACATCAATATGGGCTGCCCA
AAAGAATTTTCAATCAAAGGAGGAATGGGAGTAGCATTGATGCAAAATTTGGATAAAGCA
TGCTGTATATTGAAAACTTTGGTTGATAATCTATCAATACCTGTAACATGCAAAATAAGG
ATTTTAGATACAAAAGAGAAGACCCTTGAAGTGGTTCAAAAATTAGCACAAACAGGTATT
AAAGCTATTGCTATTCATGGCAGGACCAGAGACGAAAGACCTCAGCATGCAGTACACCAT
GACATTATAAAATATGTATCTCAAAACATATCTATACCTGTTATAGCTAATGGTGGTTCT
AAAGAAATAGAAAAATATGCTGATATATTGAAGTTTAAGGAAATGACTGGTTGTAAGAGC
GTAATGATAGCTAGAGCTGCAGAATGGAATTGTTCAATATTCAGGAAGGAAGGAATGTTA
GATATGGACCAAGTCATTAGGGAATACCTTAAACTTGCAGTACTATTTGACAATTCACCA
TCAAATACAAAGTATTGTGTACAAAATATACTAAGAGAATTACAAGAAACACCCAGGGGT
AGAAAATTTTTAGATTGCCAAACATTAGAACAAATATGTGAAATTTGGGACTTAGGTGAT
TATTGTAGAAACAAACAAAGTGAGTACCAGAAATTGGGTATTCAAGGAAGATGGCAAGTT
TGTCCAGATGAGTTAGAGCCTCCAAACAAGAAGGCAAAGTGTGGAGATATTAATTTGAAC
GATGTTTTCCAGATGAAGGTCTGCTTCATTCGGGCGAACTACAATGATCTTAATTTACCA
AAATCCCAATTACATGCTTGGGTTGGTAAAAATGGTTACAAAGTACCAACGTATGAAACA
CATCAAGTTGAGAAATTATTTCGTTCAATATTAACACTAAACGGGAAGAAATATACATCG
ACATTTTGGGAAAAGAATAAAAAGTTTGCAGAACAAGGGGCAGCTTTAGTGGCTTTGTAT
CATTTAGGATTAATAACAGAAGAAGAGTTAATAAAGCTTGGTAGTATAATCAAATAA
Protein sequence:
MVRIGTLPMRLLALRFGADIVYSEELIDWKFLRSKRRYNEILHTVDFVDQTDGTIVFRTS
EEEKEKVVLQLGTCSPDRALKVAKLVEKDVAAIDINMGCPKEFSIKGGMGVALMQNLDKA
CCILKTLVDNLSIPVTCKIRILDTKEKTLEVVQKLAQTGIKAIAIHGRTRDERPQHAVHH
DIIKYVSQNISIPVIANGGSKEIEKYADILKFKEMTGCKSVMIARAAEWNCSIFRKEGML
DMDQVIREYLKLAVLFDNSPSNTKYCVQNILRELQETPRGRKFLDCQTLEQICEIWDLGD
YCRNKQSEYQKLGIQGRWQVCPDELEPPNKKAKCGDINLNDVFQMKVCFIRANYNDLNLP
KSQLHAWVGKNGYKVPTYETHQVEKLFRSILTLNGKKYTSTFWEKNKKFAEQGAALVALY
HLGLITEEELIKLGSIIK