| New model in OGS2.0 | DPOGS204020 |
|---|---|
| Genomic Position | scaffold1064:- 38819-46086 |
| See gene structure | |
| CDS Length | 2217 |
| Paired RNAseq reads | 790 |
| Single RNAseq reads | 1797 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA004873 (0.0) |
| Best Drosophila hit | CG11337, isoform D (0.0) |
| Best Human hit | polyribonucleotide nucleotidyltransferase 1, mitochondrial precursor (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to CG11337 CG11337-PA [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to CG11337 CG11337-PA [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0004654 polyribonucleotide nucleotidyltransferase activity GO:0000175 3'-5'-exoribonuclease activity GO:0006396 RNA processing GO:0006402 mRNA catabolic process GO:0003723 RNA binding GO:0005739 mitochondrion |
| InterPro families | IPR012162 Polyribonucleotide nucleotidyltransferase IPR015848 Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type IPR012340 Nucleic acid-binding, OB-fold IPR004088 K Homology, type 1 IPR003029 Ribosomal protein S1, RNA-binding domain IPR020568 Ribosomal protein S5 domain 2-type fold IPR015847 Exoribonuclease, phosphorolytic domain 2 IPR016027 Nucleic acid-binding, OB-fold-like IPR004087 K Homology IPR001247 Exoribonuclease, phosphorolytic domain 1 |
| Orthology group | MCL14238 |
Nucleotide sequence:
ATGAGATGTAGGAGTCGATATTATTATAGACTTCTATCTTCTCAAGCTCCTATTGGTGAA
GTTGATATACCTTTTTCTAACGGGATTTCATTAAAGTTATCTACTGGTAAATACGCAAGA
TTTGCGGATGGTGCTTGTGTAGCAACAATAGGGAACACGAGTGTACTATCAACAGTTGTT
TCTAAAGCGAAACAAAGCGCTTCCAATTTTCTACCTTTAGTTGTAGACTACAGACAAAAA
GCTGCTGCCGCCGGAAGAATACCAACCAACTTTTTAAGAAAAGAATTGGGACCAACGGAA
AGAGAAATCCTTACATCACGTCTAATCGACAGATCACTACGACCATTGTTTCCATCGAAT
TATAATTTCGACACGCAAATAGTATGTAATATGTTAGCAGTGGACGGGACGAACCCTCCG
GAGACGGTCGCCATTAATGCTGCTAGCGCTGCACTTGCTTTATCCGACGTTCCTTGGAAC
GGACCTGTAGGGGCTGTCAGATTGGGCCTAATTGACAATGAGCTGATTATAAATCCAACG
AGAAGAGATCTTGAGAGGTCAATCCTTAACCTAGTTGTAGCGGCCACTGCTGGTAATTTG
GTGGTCATGATGGAGGGGAGCGCCAAGGTCATTCTCCAACAAGACCTCTTAAAGGCTATC
AAACTAGGTGCTAAGGAAGCTCAGAATGTTGTACGTGGTATAGAAAAATTACAGAAGAGT
CACGGGAAAATGAAAAGGGAATATGAAATGCCAGCCGTCCTCGACCCAAGTGTTGTGGAC
TCCATCAAGACATTGTCTTCTATGAAGATCAGAGAAATACTCAGTGATTACAGTCATGAC
AAGACCAGTCGCGACCTGGCCATATCGGATCTGCGGCAGACGGTCCTCAACCAGCTGAGA
GACACGGACGTCGACGTGACCCTACTACAGGACGGCTTTAACAACCACCTCAAGGAAATC
TTCAGGGATATGATATTCGAGAACGACGTGAGATGCGACGGTAGGGGACTGGACGAGCTC
AGGAAGATATCCTGTGAGGTAGGTTTGTACGAGCCTCTCCACGGCAGTGCTCTGTTCCAA
CGAGGTCAGACCCAAGTCCTGTGCACCGTGGCCTTCGACTCGCCGGAGAGCGCGCTCAAA
ATGGACCCTCTCACTATGATCACAAGCGGTGTAAAGGAGAAGAACTTCTTCCTCCACTAC
GAGTTCCCGTCCTACGCAACGGGCGAGGTTGGGCGCGTGAGCGGGGGCGGGGGCGGGCGG
CGGGAGGCCGGACACGCTGCGCTCGCTGAGAGGGGGCTCCTGCCGGTCGTGCCACAACAC
CAGTGTACCGTGAGACTCACCGCTGAAGTGCTCGAGAGTAACGGTTCAAGTTCCATGGCG
TCCGTGTGCGGGGGTTCCCTGGCGCTCCTGGACGCGGGCCTGGCGCTCTCCGGGGCCGCC
TCGGGCGTCGCCGTGGGCCTGGTCACACGATACAAGGACGGGAAGATAGAGGACTACAGG
ATACTCACAGATTTGTTAGGTATAGAGGACTACATGGGTGACATGGACTTCAAGATAGCC
GGCACCAAGAAGGGTGTGACGGCTCTCCAGGCGGATGTTAAGATCCCTGGCCTTCCGCTG
AAGGTTGTCATGGAGGCGGTGCAGAGAGCCAGCGACGCTAAGGCCAAGATCATTGATATT
ATGAACGCTTGTATAGACAAGCCGAGAGACGGTCGCAAAGAGAACATGCCGGTCATAGAG
GAGATGGAGGTGGAGGTACACAAGAGAGCGAAGCTGCTGGGAGTGGGCGGAGCCAACGTT
AAGAGACTGTATCTAGAGACGGGGGTTCAGATAACTCCGATCGACGAAACGCATTACCGA
GTGTTCGCCCCTTCCCCGGCCGCGCTGGAGGACGCTCGCTCCAGACTCGCCGCCATACTG
AACGCCACCAGGACACCGGAAATGGAGTTCGGGGCGATATATACGGCCAAGGTGGTTGAA
GTGAAGGATATCGGGGTGTTGGTGACGCTGTACCCGGACATGTCCCCGGCGCTGGTCCAC
AACACCCAGCTAGACCACCGGAAGATAATGCACCCATCAGCGCTCGGCCTGACCGTGGGC
TCGGAGATACAAGTCAAATACTTTGGTCGTGATCCCGTTTCCGGTCAAATGAGGCTCTCG
AGGAAAGTTCTGACGTCACCTCCGCCGGGCATAGTCAGGAACCACGACAAGAGCTAG
Protein sequence:
MRCRSRYYYRLLSSQAPIGEVDIPFSNGISLKLSTGKYARFADGACVATIGNTSVLSTVV
SKAKQSASNFLPLVVDYRQKAAAAGRIPTNFLRKELGPTEREILTSRLIDRSLRPLFPSN
YNFDTQIVCNMLAVDGTNPPETVAINAASAALALSDVPWNGPVGAVRLGLIDNELIINPT
RRDLERSILNLVVAATAGNLVVMMEGSAKVILQQDLLKAIKLGAKEAQNVVRGIEKLQKS
HGKMKREYEMPAVLDPSVVDSIKTLSSMKIREILSDYSHDKTSRDLAISDLRQTVLNQLR
DTDVDVTLLQDGFNNHLKEIFRDMIFENDVRCDGRGLDELRKISCEVGLYEPLHGSALFQ
RGQTQVLCTVAFDSPESALKMDPLTMITSGVKEKNFFLHYEFPSYATGEVGRVSGGGGGR
REAGHAALAERGLLPVVPQHQCTVRLTAEVLESNGSSSMASVCGGSLALLDAGLALSGAA
SGVAVGLVTRYKDGKIEDYRILTDLLGIEDYMGDMDFKIAGTKKGVTALQADVKIPGLPL
KVVMEAVQRASDAKAKIIDIMNACIDKPRDGRKENMPVIEEMEVEVHKRAKLLGVGGANV
KRLYLETGVQITPIDETHYRVFAPSPAALEDARSRLAAILNATRTPEMEFGAIYTAKVVE
VKDIGVLVTLYPDMSPALVHNTQLDHRKIMHPSALGLTVGSEIQVKYFGRDPVSGQMRLS
RKVLTSPPPGIVRNHDKS