| New model in OGS2.0 | DPOGS200832 |
|---|---|
| Genomic Position | scaffold1237:- 23686-27139 |
| See gene structure | |
| CDS Length | 1422 |
| Paired RNAseq reads | 1241 |
| Single RNAseq reads | 3268 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009885 (0.0) |
| Best Drosophila hit | CG9253 (0.0) |
| Best Human hit | probable ATP-dependent RNA helicase DDX47 isoform 1 (1e-173) |
| Best NR hit (blastp) | PREDICTED: similar to GA21647-PA [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to GA21647-PA [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0004004 ATP-dependent RNA helicase activity GO:0003676 nucleic acid binding GO:0005524 ATP binding |
| InterPro families | IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR014014 RNA helicase, DEAD-box type, Q motif IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site |
| Orthology group | MCL12255 |
Nucleotide sequence:
ATGACGGAAGATAAAGAAAAAAGTGGTAGTGAAAAGAGTGATAGTGAGGATCAGGGCTCC
GACGAAGAACAGCAAGTTGAAATTAGAGAGAACCATGAAGAAGACACAGGGACTTTTCAA
GAACTTGGTGTCGTTGACGTTCTGTGTGAAGCTTGTGCAGAGCTGAAATGGAAACATCCA
TCCAAGATCCAAAAAGAAGCTATACCTGTAGCATTACAGGGTAAAGACATAATTGGCTTA
GCGGAAACTGGTTCAGGCAAAACAGGAGCATTTGCTTTACCCATACTCCAAGCGCTGTTG
GAAAATCCACAAAGATACTTTGCTCTGATTCTCACACCCACAAGAGAATTGGCATTCCAA
ATATCTGAGCAATTTGAAGCCCTTGGTGCCAGTATAGGTGTGAAGTGTGCAGTAATAGTT
GGAGGTATGGACATGGTGGCACAAGCTCTCATCCTGTCTAAGAAGCCTCACATCATCATC
GCCACCCCTGGCCGTCTAGTGGACCACTTGGAGAATACAAAGGGGTTCAATTTAAAGGCA
CTTAAATATCTTGTGATGGATGAAGCAGATAGAATATTAAACATGGACTTTGAAGTGGAA
GTTGATAAAATACTACGCGTCATTCCTCGCGAACGCCGCACTTACCTGTTCTCGGCGACC
ATGACCAAGAAAGTGCAAAAGTTACAGCGAGCCTCCCTTCAAGACCCTGTCAAGGTGGAA
GTTTCCACTAAATATCAAACTGTGGAGAAGCTGCAGCAGTACTACATATTCATACCCGTG
AAGTTCAAGGACGTATACCTGGTTCACATCCTGAACGAGCTGGCGGGCAATTCGTTCATA
GTGTTCGTGTCGACATGCGCGGGCGCATTGCGTGTGGCGTTGTTGCTGCGAGCGCTGGGA
GTGGGCGCTGTGCCGCTACATGGACAGATGTCGCAACAGAAAAGATTGGCCGCACTTAAT
AAGTTTAAAAGCAAAGCTCGCTCGGTGCTGATATGTACTGATGTCGCTTCTAGAGGTCTG
GACATCCCTCATGTCGACGTGGTAGTCAATTTGGACATTCCTTTGCACTCCAAGGACTAT
ATACATCGTGTTGGAAGAACTGCACGTGCGGGTAGAGCTGGGAAAGCTATTACTTTTGTT
TCACAGTATGACGTGGAGTTGTACCAGCGTATAGAACAGCTGATCGGCAAACAACTGCCG
CTGTACAAGACGGACGAGAACGAGGTCATGGTGCTGCAGGAGAGAGTCGCCGAGGCGCAG
AGGCTTACTAAGATTGAAATGAAAGAGTTGGAAGACAAGAAAGGCTCCAGAGGAAAGAAA
CGCGGCGCCGACAGCGACGACGACACCGAGGAGGCGGTCGGAGTCAGGAGGCGGATCAAG
GGCAAGAACAAGAACAAACATGGCGGGAAGAGGAAACGATGA
Protein sequence:
MTEDKEKSGSEKSDSEDQGSDEEQQVEIRENHEEDTGTFQELGVVDVLCEACAELKWKHP
SKIQKEAIPVALQGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQ
ISEQFEALGASIGVKCAVIVGGMDMVAQALILSKKPHIIIATPGRLVDHLENTKGFNLKA
LKYLVMDEADRILNMDFEVEVDKILRVIPRERRTYLFSATMTKKVQKLQRASLQDPVKVE
VSTKYQTVEKLQQYYIFIPVKFKDVYLVHILNELAGNSFIVFVSTCAGALRVALLLRALG
VGAVPLHGQMSQQKRLAALNKFKSKARSVLICTDVASRGLDIPHVDVVVNLDIPLHSKDY
IHRVGRTARAGRAGKAITFVSQYDVELYQRIEQLIGKQLPLYKTDENEVMVLQERVAEAQ
RLTKIEMKELEDKKGSRGKKRGADSDDDTEEAVGVRRRIKGKNKNKHGGKRKR