| New model in OGS2.0 | DPOGS214678 |
|---|---|
| Genomic Position | scaffold4681:- 13785-17043 |
| See gene structure | |
| CDS Length | 654 |
| Paired RNAseq reads | 1023 |
| Single RNAseq reads | 3109 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001950 (8e-80) |
| Best Drosophila hit | Pabp2, isoform B (5e-58) |
| Best Human hit | polyadenylate-binding protein 2 (1e-52) |
| Best NR hit (blastp) | polyadenylate binding protein 2 [Bombyx mori] (1e-99) |
| Best NR hit (blastx) | polyadenylate binding protein 2 [Bombyx mori] (6e-96) |
| GeneOntology terms | GO:0008143 poly(A) RNA binding GO:0005634 nucleus GO:0006378 mRNA polyadenylation GO:0005737 cytoplasm GO:0003723 RNA binding GO:0003729 mRNA binding GO:0000166 nucleotide binding GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071013 catalytic step 2 spliceosome GO:0071011 precatalytic spliceosome |
| InterPro families | IPR012677 Nucleotide-binding, alpha-beta plait IPR000504 RNA recognition motif domain |
| Orthology group | MCL14850 |
Nucleotide sequence:
ATGGCAGATAATGACGATTATTTAGACTCGATTGACAACAACCATCTAGACGGAACCAAC
GGTTCATTAAACATGACCGACAACAGCCTAGGCGGTGATGAAGCTTCAGGTACAGACGTA
CCGGACCTGGCCGCGATTAAGGCCAGGGTTAGAGAAATGGAAGAGGAGGCAGAGAAACTT
AAACAGATGCATACAGAGGTGGACAAACAGATGAGCTTAGGAAGCCCGCCGGGACTCACG
AGTCCCCTAAACATGTCGCTTGAAGAAAAAATTGAGACTGACAATAGGTCAGTTTATATT
GGCAATGTGGATTATGGTGCTACAGCTGAGGAGCTGGAGCAGCACTTCCATGGCTGTGGG
TCTATTAATAGGGTGACAATATTATGTAATAAGTTTGATGGACATCCAAAAGGATTTGCT
TATATTGAATTTGGAGACAAAGATAGCGTTCAGACCGCCATGGCAATGGACGAGTCACTG
TTTAGAGGCAGGCAGATAAAGGTGATGCCGAAGCGTACCAACAAGCCAGGCCTGTCGACA
ACCAACCGTCCACCCCGCGGCGCGAGAGGTCGCGGTCGATCCTACCGCGGCGGGTTCACG
CCGTACTTCTCCGGCTACCGGCCCATGCGCCGTGGCAGGTACTACCCATACTAA
Protein sequence:
MADNDDYLDSIDNNHLDGTNGSLNMTDNSLGGDEASGTDVPDLAAIKARVREMEEEAEKL
KQMHTEVDKQMSLGSPPGLTSPLNMSLEEKIETDNRSVYIGNVDYGATAEELEQHFHGCG
SINRVTILCNKFDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGLST
TNRPPRGARGRGRSYRGGFTPYFSGYRPMRRGRYYPY