| New model in OGS2.0 | DPOGS209485 |
|---|---|
| Genomic Position | scaffold1435:- 9733-12833 |
| See gene structure | |
| CDS Length | 1296 |
| Paired RNAseq reads | 1692 |
| Single RNAseq reads | 4001 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007440 (6e-108) |
| Best Drosophila hit | CG10341, isoform B (9e-41) |
| Best Human hit | H/ACA ribonucleoprotein complex non-core subunit NAF1 isoform b (2e-31) |
| Best NR hit (blastp) | GF15068 [Drosophila ananassae] (9e-48) |
| Best NR hit (blastx) | GJ17682 [Drosophila virilis] (3e-52) |
| GeneOntology terms | GO:0030515 snoRNA binding GO:0009982 pseudouridine synthase activity GO:0031429 box H/ACA snoRNP complex |
| InterPro families | IPR009000 Translation elongation/initiation factor/Ribosomal, beta-barrel IPR007504 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 |
| Orthology group | MCL20450 |
Nucleotide sequence:
ATGGAAAACCTTGATCAAAGTAACAATAAAAACGTGTCGCTCAGTCTAATAGCTGAATAT
GGCTCGGAATCGGATTCGGAGGATACCCGATCGAATGAGCACACCGCACAAGATGACTCG
GATGCTGTCGAATTAAGTGAAATGGTTTTGAAAAATAACATTATCAATGCTTGTGCCCAC
GGACCCCTTGCTGAAGGTAGTAGTGAGAATGTGGTCACCATGAGACACATGATCATCGAC
AGTTCAGAGAGCGGTGTTATGGAGTATGATGTGACTGAGTACCGCGAGCTGGACAGCGAC
TCCGACTCGAGTTCGGACGACTCGAGTGATATTGATTCTGTGAAGGATATTGAGGAACTT
TCTAGCGGCGATGAACAAGAAGGTAGTAACCGGCCCGGTAAGTTAGAAACTCCCAAAGTG
CACGGCGAACTAGGTTTGGATGACTTGCCGCCGATCGAGGATCTTGCCATTAGTCTGCCG
GCCCAGGAGACTATAAAAATTGGAAAAATTGCAAGCATAGTTGATAGATTAGTTATAGTT
CGTGCTTTCGAAGCAACCCCAGCCGTTGATCTGGATAGTGTACTATTTTTGGATAACGGT
GCCAAAGCATTGGGCAAAGTATTTGATGTTTTTGGACCGGTAACAGAACCTCATTACTGC
GTCCGTTTCAATTCGTTGGAGCACGTCCGAGAGCGGGGCGTTGTTACGGGTGCGGACGTG
TACATAGCGCCTCGCAGCGCGCACACCAGCTACGTGTTTCTAGCTGAGCTCATGAAAGTC
AAAGGCTCAGATGCGTCGTGGCTGAACGATATAGAGCCGCCTCCGAGCCACGTGGATTAT
TCTGATGATGAGGAGGAGAGACGAGCCAACAGAACTAGGAAGGAACAGCGACAGAACAAA
CAAGAGGACTCCGGGGACGGGGGCACGTCCGACAACCAGCCGAGGAGAGTACTCGAGGCC
AAACGACACCAGCGACCCTCCGAGTCGAGTAGTCGCTTTGGCGGAAACTACCGAGGACCG
CCAGGCTTCAGGAGGAACCCTTCGAGCTTCATAAGAAACACCAGACCCTGGGACGACCAG
ACCAGGACGCCGCCCCACCCCGTCGATCCCAACCAGCCGTTCTTTCCTACATTCAATCCG
TTCATTCCGTTCATGAACGGCAACCCGTTCGGCAGGTCCCGGATGCCAGCCATGCCGCCG
TACCGCCAACACGTGCCGATGTTCGGCGCCAATTACAACATGTCCGGGCCGAAGCCCCAG
TGGAGTCCCGGCCCTCCGCCCCCGCCCGGGACCTAA
Protein sequence:
MENLDQSNNKNVSLSLIAEYGSESDSEDTRSNEHTAQDDSDAVELSEMVLKNNIINACAH
GPLAEGSSENVVTMRHMIIDSSESGVMEYDVTEYRELDSDSDSSSDDSSDIDSVKDIEEL
SSGDEQEGSNRPGKLETPKVHGELGLDDLPPIEDLAISLPAQETIKIGKIASIVDRLVIV
RAFEATPAVDLDSVLFLDNGAKALGKVFDVFGPVTEPHYCVRFNSLEHVRERGVVTGADV
YIAPRSAHTSYVFLAELMKVKGSDASWLNDIEPPPSHVDYSDDEEERRANRTRKEQRQNK
QEDSGDGGTSDNQPRRVLEAKRHQRPSESSSRFGGNYRGPPGFRRNPSSFIRNTRPWDDQ
TRTPPHPVDPNQPFFPTFNPFIPFMNGNPFGRSRMPAMPPYRQHVPMFGANYNMSGPKPQ
WSPGPPPPPGT