| New model in OGS2.0 | DPOGS203534 |
|---|---|
| Genomic Position | scaffold2436:- 10918-16844 |
| See gene structure | |
| CDS Length | 1632 |
| Paired RNAseq reads | 371 |
| Single RNAseq reads | 951 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009181 (4e-78) |
| Best Drosophila hit | CG5602 (9e-52) |
| Best Human hit | DNA ligase 1 (5e-53) |
| Best NR hit (blastp) | PREDICTED: similar to CG5602-PA [Apis mellifera] (4e-71) |
| Best NR hit (blastx) | PREDICTED: similar to CG5602-PA [Apis mellifera] (6e-66) |
| GeneOntology terms | GO:0003910 DNA ligase (ATP) activity GO:0003677 DNA binding GO:0005524 ATP binding GO:0006260 DNA replication GO:0006281 DNA repair GO:0006310 DNA recombination GO:0016874 ligase activity GO:0006974 response to DNA damage stimulus GO:0000166 nucleotide binding |
| InterPro families | IPR012308 DNA ligase, ATP-dependent, N-terminal |
| Orthology group | ND |
Nucleotide sequence:
ATGTCCCAAAAGAGTATTAAATCGTTTTTTAAAATAACTCCTAAGAAAACTGAAGTTATA
ACCGAAGCAGCGAATCAGGAACGTAATGCATCGCCATCCAATACAAGTATCAATAGTGAA
ACTGACAGTCCAAATGGAAATGCAAAGAGAGGTAAAAGATTGAGATCAAGTAGCAGTGAA
CATGAATCTGGAGAGGGTAAGAAGATTCCATCTCCAAGTAGTTCAGAGAAGAAAAAGAAA
GTCAAACGTCAGAGAATTGAAAGTTCGGAGAGCGAAACAGAAAATACAGTAGAGGAAGAG
AAAATGGAGGTGAAACTTGAAAATAACAATCCACCCAAAACTTACGCCTCACCGAAGGCC
AAGAAAATGAATGAGAAGAAAATAAAGATAGAGAAGGAGCGATCACCAGAAAGTAACGAT
AGAAAAACAGAAGTGAAAAGTCCATCTCCTGTTAAGATGCCAAAGAATAAAGCGAATGGT
AACATTATGAGTTCATTTGTAAAGATTGAGAGGCCGGACACAAAGAAAGATAAAGAAAAT
ATTACAGACGCAGATAAAGATAACTCTGACATAGTTAAAGGTATGCGTAATGCATCGCCA
TCCAATACAAGTATCAATAGTGGAACTGACAATCCAAATGGAAATGCAAAGAGAGGTAAA
AGATTGAGATCAAGTAGCAGTGAACATGAATCTGGAGAGGTTAAGAAGATTCCATCTCCA
AGTAGTTCAGAGAAGAAAAAGAAAGTCAAACGTCAGAGAATTGAGAGTTCGGAGAGCGAA
ACAGAAAATACAGTAGAGGAAGAGAAAATTGAGGTGAAACTTGAAAATAACAATCCACCC
AAAACCTACGCCTCACCGAAGGCCAAGAAAATGAATGAGAAGAAAATAAAGATAGAGAAG
GAGCGATCACCAGAAAGTAATGATAGAAAAACAGAAATGAAAAGTCGGTCTCCTGTTAAG
ATGCCAAAGAATAAAGCGAATGGTAACATTATGAGTTCATTTGTAAAGATTGAGAGGCCG
GACGCAAAGAAAGATAAAGAAAATATTACAGACGCAGATAAAGATAACTCTGATATCGTT
AAAGAAGTTGATTACAATCCCGGTAAAACGAAATACAATCCGATCAAAGATGCCTGCTGG
AAGAAAAGTCAAGATGTACCATATCTGGCGTTAGCAAAGACCCTAGAAGTCATAGAAGCG
ACGTCTGCTAGACTTAAAATGGTGGAGATATTAAGTAATTACTTCAAGTCGGTCATAGCA
TTGACTCCAGAGGATCTTCTGCCTAGCATATATCTGTGTTTGAACCAACTAGCACCAGCG
TATAAGAGTCTTGAATTAGGTATAGCTGAGACATACTTGATGAAGGCCGTGGGTCAGTGT
ACAGGGCGGACCCTCGCACAGATGAAGGCGGCTGCACAGCGCTGCGGGGACCTGGGTCTG
GTGGCGGAGCAGGCTCGCGCTACACAGAGGACGATGTTCGCTCCCCCGCCCCTCACCGTG
AGGAAAGTTATTACGGCGCTCAGAGACGTGGCCGCTATGACGGGCCAGGCGTCTGTCAAC
AAAAAAATTGGGAAAATCCAATCGCTTTATGTTGCATGCAGACATTCAGAAGCCAGATAT
CTGATCAGGTAA
Protein sequence:
MSQKSIKSFFKITPKKTEVITEAANQERNASPSNTSINSETDSPNGNAKRGKRLRSSSSE
HESGEGKKIPSPSSSEKKKKVKRQRIESSESETENTVEEEKMEVKLENNNPPKTYASPKA
KKMNEKKIKIEKERSPESNDRKTEVKSPSPVKMPKNKANGNIMSSFVKIERPDTKKDKEN
ITDADKDNSDIVKGMRNASPSNTSINSGTDNPNGNAKRGKRLRSSSSEHESGEVKKIPSP
SSSEKKKKVKRQRIESSESETENTVEEEKIEVKLENNNPPKTYASPKAKKMNEKKIKIEK
ERSPESNDRKTEMKSRSPVKMPKNKANGNIMSSFVKIERPDAKKDKENITDADKDNSDIV
KEVDYNPGKTKYNPIKDACWKKSQDVPYLALAKTLEVIEATSARLKMVEILSNYFKSVIA
LTPEDLLPSIYLCLNQLAPAYKSLELGIAETYLMKAVGQCTGRTLAQMKAAAQRCGDLGL
VAEQARATQRTMFAPPPLTVRKVITALRDVAAMTGQASVNKKIGKIQSLYVACRHSEARY
LIR