New model in OGS2.0 | DPOGS203534  |
---|---|
Genomic Position | scaffold2436:- 5856-8209 |
See gene structure | |
CDS Length | 861 |
Paired RNAseq reads   | 969 |
Single RNAseq reads   | 2416 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA009181 (1e-99) |
Best Drosophila hit   | CG5602 (7e-95) |
Best Human hit | DNA ligase 1 (2e-80) |
Best NR hit (blastp)   | GK15713 [Drosophila willistoni] (3e-106) |
Best NR hit (blastx)   | PREDICTED: similar to AGAP009222-PA [Acyrthosiphon pisum] (2e-98) |
GeneOntology terms    | GO:0003910 DNA ligase (ATP) activity GO:0006260 DNA replication GO:0006281 DNA repair GO:0003677 DNA binding GO:0006310 DNA recombination GO:0005524 ATP binding |
InterPro families    | IPR012340 Nucleic acid-binding, OB-fold IPR012310 DNA ligase, ATP-dependent, central IPR016027 Nucleic acid-binding, OB-fold-like IPR012309 DNA ligase, ATP-dependent, C-terminal |
Orthology group | MCL12634 |
Nucleotide sequence:
ATGAGATCAAAGGAGGTGTTATCGACTCGCAAACGGAAGGACGCGTCCGAGGACCAGATC
AAGGTGCAGGTGTGTGTGTTCGTGTTCGACCTGCTGTACCTCAACGGAGAGGCGCTCGTC
AGGGAAGACCTGGAGAAAAGGAGGGAGCTGTTGAGGCAGCACTTCAATGAGGTCGAAGGT
GAATGGCAGTTCGCGGTGAGCCGTGACTGTACCGACGAGGAGGAGGTGGCTCAGTTCCTG
CAGGAGTCTGTGAAGGCATCCTGTGAGGGTCTCATGGTGAAGGCGCTCCGGGGAGAGAAT
GCGCGCTATGACATAGCCAGGAGGTCGCACAACTGGCTGAAGTTAAAGAAGGACTATCTG
GAGGGCGTGGGCGACTCCGTGGACGCGGTGGTGATCGGCGCTTATCACGGGCGGGGGAAG
AGGACGGGCGTGTACGGCGGGTTCCTGCTGGCGTGCTACGACCCCGCTCACGAACAGTAC
CAGTCGCTCTGCAAGATAGGCACCGGCTTCTCCGACGAGGACCTGCGCACGCTCAGCGAC
ACGCTCGCCGAACACGTCGTAGACGGACCCAGGAGCTACTACTTGTTCGACTCGAGCCAC
TCCCCGGACGTGTGGTTCTCTCCGTCGTGTGTGTGGGAGGTGCGCTGTGCGGACCTGTCC
CTGTCCCCGGCTCACCGCGCCGCTCTGGGCCTCGTACATGACAGTAAAGGAATCAGTCTG
CGGTTCCCGAGGTTCATCCGTGTCCGTGACGACAAGTCCGCGGAGCTGGCGACCTCCGCG
GAACAGATCGCAGAGCTCTACCTCCGGCAGGACCAGGTCAAGAACACCACCAACAACAAC
CAGAGAGACGACTTCTACTGA
Protein sequence:
MRSKEVLSTRKRKDASEDQIKVQVCVFVFDLLYLNGEALVREDLEKRRELLRQHFNEVEG
EWQFAVSRDCTDEEEVAQFLQESVKASCEGLMVKALRGENARYDIARRSHNWLKLKKDYL
EGVGDSVDAVVIGAYHGRGKRTGVYGGFLLACYDPAHEQYQSLCKIGTGFSDEDLRTLSD
TLAEHVVDGPRSYYLFDSSHSPDVWFSPSCVWEVRCADLSLSPAHRAALGLVHDSKGISL
RFPRFIRVRDDKSAELATSAEQIAELYLRQDQVKNTTNNNQRDDFY