| New model in OGS2.0 | DPOGS201618 |
|---|---|
| Genomic Position | scaffold2528:- 8953-20729 |
| See gene structure | |
| CDS Length | 3888 |
| Paired RNAseq reads | 9687 |
| Single RNAseq reads | 22576 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012171 (8e-06) |
| Best Drosophila hit | karst, isoform A (4e-86) |
| Best Human hit | spectrin alpha chain, brain isoform 3 (4e-35) |
| Best NR hit (blastp) | PREDICTED: similar to karst CG12008-PA, isoform A [Apis mellifera] (0.0) |
| Best NR hit (blastx) | Spectrin beta chain, putative [Pediculus humanus corporis] (8e-159) |
| GeneOntology terms | GO:0030707 ovarian follicle cell development GO:0007009 plasma membrane organization GO:0003779 actin binding GO:0008017 microtubule binding GO:0008092 cytoskeletal protein binding GO:0008091 spectrin GO:0016327 apicolateral plasma membrane GO:0045186 zonula adherens assembly GO:0000910 cytokinesis GO:0006897 endocytosis GO:0016324 apical plasma membrane |
| InterPro families | IPR001452 Src homology-3 domain IPR018159 Spectrin/alpha-actinin IPR002017 Spectrin repeat |
| Orthology group | MCL10080 |
Nucleotide sequence:
ATGAACCTGTACCAGTTCCTCGAAGACCATGAGGAGGAAGAGGGGTGGGTGATAGAGAAG
CAGCGCATCTGCCGGGCGGAGGTCGCGGCCAAGGATCTGAGGGCGGTCACGGCGCTGAGG
CAGAAACACACCGCGCTGATGCACGAGCTGCGGGCCAGGGACCTCGTGGCCCAGAGGCAC
AGGGCCAAGGGACAGAGTCTAATAGAGTCAAAGCACCCTAAGAGCGGCGAGATCGAGCGC
CGCCTGGCGTCTCTGGCCCAGCAGTGGGAGATCCTGCGCCAGCTGGCGGACGACCGGGAG
AAACAGCTGGCGGACGCCGCGGAGGCGCATCAGTTCTACGGGGACGCCAACGAGGCGGAG
TCCTGGATGAGGGAGAAGCGCGCTCTGGTGGCGTCTTCAGACTGCGGCCGGGACGTAGCC
GGCGCGGCCGCCCTGCTGGCCAGGCAGCGCGTGTTGCACGACGAGCTCAGGGCGCACGGG
GCCGAGCTGCGAGCGCTGGCGGCCGCCGCAGACAGACTCACCAAGAACGGCATCCACACA
CTACAGCTGCCTATGGAGGTGGAGTCTGTGGCCGGCGAGCAGGAGGACGAGTGGTCCAGC
GAGTCGCGCCTGGTGCCGACCGAGGTGTGGGAGGAGGAGCCGGTCGAGAGGCTGGAACAC
CGCACCGTCACCGAGCAGAGGAGCGTGTCACAGGTGAAAGCTCTGTACGCGTTCAGCGGT
CAGGGCATCTCGATAGCGAAGGGCGAGGTGATGTTCCTCATCAGCAAGACCAACCCCGAC
TGGTGGTCCGTCCGCAAGGCCGACAGGACTGACGGCTTCGTGCCAGCCAACTACGTCAGG
GAAATAGAACCGAGAGTTGTGCCGGTCCAGGTCCGCCGTCCGGAGAAGGTGCGCACGGTG
CAGCGCGTGAAGAAGACGGTGCTGGTGAAGCAGGTGGTGCAGGTGAGGAGGACGCCTGCC
AGGAGGACCAGGCTCCCTCCGCCGGACAGACATCCGCCCGTCCAGCAGAGGATGGAACAT
ATACAGCAGGAGTATGAGGAGCTGCTCAAGCTGTCCGAGGCCCGCCGTCTGCAGCTGGAG
GACGCTATCAAGCTATACAGCTTCTTCGCCGAGTGCGACGACTTCGACAAGTGGATCCGG
GACAAGGAGAAGATGCTGAGGACCGACGAGCCCCAGGACAGCGTGGACAACGCTAAGAGG
ATGTACGAGAAATTCGTAACGGACCTGTCAGCGGCCTCCAAACGCCTGGAGAGTATCGAG
GCGGCGGCCGAGGAGCTGGTGGCGGCGGAGCACGGCCAGGCGGCGCGGGCTGCGGCGAGG
AGGCAGCAGCTGCGGCAGCAGTGGGACAGGCTGCTGCGGCTCAAGCAGCAGAAGGAGAAG
AGTCTGGAGGGGGCCTCCAGCGTGGAGCTCTTCAACCGCACTTGTGATGAAGCGCTCGAG
TGGATGTCGGAGAAGGAGCGCCAGCTGGCGGACGGCAGCGCCAGCGCAGCGGACCTCAGG
ACGGTGAGGGCGCTGCAGCGGAGACACGCGCAGCTGGAGAGGGAGCTGCAGCCCTTGCGA
GACAGACTGCACACCGTCACGCTGCTGGCGGACTCGGTCAAATCCCAGTATCCGTCGGAG
AGGTCCAACGTCGAGGCACGCCAGAGACAGCTGTGCTCGTCCTGGGAACGCTGCGAGGCG
CAGGCGGCGGAGCGCCGGGCTCGCCTGGAGAGCGCTGTCGGACACCAGGTGTTCGCCAAC
GGAGCCAGCCAGCTGCAGGACTGGATCCAGAAAATCCGCTCCCAAGTATCATCCGAGGTG
CGCGCCAGTGACGTGGCGACCGCTGAGTCTCTGTTGAAAGACCACCAGGACGTGCTGGAC
GACATCAAGGCGCACAAAGACGAGTTCAAGGAGGTGATCAACCTCGGCCAACAGCTGGTG
GCGACCAATCCAGCACTGACGGACGTGGCGGACACGGTGAAGATGCTGCAGCAGGAACAG
GACGCCGTCATGAAAGAATGGCAGGCCAAGGAGCAGGTGTTGCAGCAGTGCCTCCAGCTG
CAGAGCTTCAACCGCGAGGCGGATCAGATAGACGCGGCGTCTGGCGCGCATGAGGCTGTC
CTCAACTACAACGACTATGGGTCGTCGGTGGACGAGGCGGAGGCCTACCTGAAGCGCCAG
GAGGAGGTGGAGGCCCGCCTCAGTGCGCAGGACGAGCGCGTAGCAGCCTTCGCAGCGCGA
GCGCACGCGTTAATAGTCGCCAAGCCACCGCACTATGCGAAGGAACAGTTAGTATTGATC
TCATCATACCATGGATCTTGTGCGGCTCCGGGGCCATCGTTGCAGGGAGAGGAGCTTCAG
CAGTGCCTGGGATTAAACCAGGTTATCCAGTCCCGCTGCGACAGCGTGGTGTCCCGTCGG
GAGGCAGTCCGGCATGCTGCAGCAGCCAGGAGACGAGCGCTGCTGGCGAACCTCGCGCAT
CACCAGGTACAGTACCTGATGAAGAATACTGACACACAGAGAACAGGCCCGTTCCTCGCG
TCGGTGGACGAGCTGCAGACCTGGATACAGGACAAGACGAGGACCGCCACGGACCAGAGC
TACCGAGAGCTGGCAAACTTGGAGCGGAAGCTGCAGAAGCACGAGGCCTTCGAGCGAGAG
CTCCAGGCGAATGAGAAGCAGCTCAGGAATGTTGAGAGTATCGGGCTCTCCCTCCAGAAG
TCAGACCCTGGTCACGCTGAGGAGGTGTCGTCTAGACTGCAGGCTCTGCAGGTAGCCTGG
GCGGCGCTGGTGGCAGCCTCCAGGGACAAGGGCGCCAAGCTGAGGCAGGCCAGCCAGCAG
AGGATACACAGACGGTCCGTGGAAGACGCCAAGGCGAGGCTGGCTGAGGTGGAGCGAGCT
CTGAACAGCACAGAGCTGGGATCAGATCTGCGATCCTGCAAGCGACTGCTTCTACTACAC
CAGGCTCTAGAGCAAGAGCTGAGTCAATGCGAACAGCGAGCGGAGTCCCTGGCGGCTCAG
GGTTCCGACCTGGTCTCCAGCGGACATTTCGACGGCGCAGCCATCGAGCGGGACTCCGCC
GCGCTGCTGCAAGCCGCCCGGGCGCTCCGTCCTCGAGCAGCAGAGAGGAGACAGGCGCTA
GAAACTAGTCTACAACTTCACAAGTTCGCCGCAGAGGTTTCCGGTGAATTGGCCTGGGTG
TCGGAGCGCCAGGGCGCCGCCTCCTCCACCACGCTCCCTGGGGACCTGCACGCGGCGCAG
GCGGCGCAGAAGAAACACGCCAAGCTGCGAGCGGAGCTGGAGGGCCGGAGGCCTATCGTG
GAGCGGGTTCTACACCGGGGCAAGGAACTAGACACGCATCCGCAGGCTGGCAAGATAAAG
CAACTGTGCAAGGAACTAGAAGAGGCCTATTCCTCTGTATCATCAGCGGCGGAGGAGCGA
GCGGCCCGGCTGGAGGCCGCGCTTAAAGCCCAGCAGTTCCTCCACGACGCGGCGGAAGTG
GACTCCTGGCTGGCTGACAAGGCGGCGGCACTGGCTTCCGCTGACGTCGGCAATGACAGG
CACAGAGCGACACAACTCCTCACCAGGCATAAGGCTGTGGAACTCGAGTTGGATACGTAC
GCGGCTATCATAGCGGAAATGGGTCACGTGGCGCAGTCGATGGCTTCCGGCGGTCATCCC
GAGGGCGCCGCCCTGGTCACCAGGCACGACCAGCTGGCCGGCAGTCTGGCCAGGCTGCAA
AGACTGGCAGCCAGCAGGCAGGCCGCGCTCATGGAGAGCGTCTGCAGACATGAATATCTG
GCTGAGAGCGCCGAGCTGGAGGAATGGGTTGCGGAGCAGCAAGCGGCCGCCTCCAGCGAG
GATTACGGACAGGATTACGAGCACTTACTGGTGAGTAACGAGACATAG
Protein sequence:
MNLYQFLEDHEEEEGWVIEKQRICRAEVAAKDLRAVTALRQKHTALMHELRARDLVAQRH
RAKGQSLIESKHPKSGEIERRLASLAQQWEILRQLADDREKQLADAAEAHQFYGDANEAE
SWMREKRALVASSDCGRDVAGAAALLARQRVLHDELRAHGAELRALAAAADRLTKNGIHT
LQLPMEVESVAGEQEDEWSSESRLVPTEVWEEEPVERLEHRTVTEQRSVSQVKALYAFSG
QGISIAKGEVMFLISKTNPDWWSVRKADRTDGFVPANYVREIEPRVVPVQVRRPEKVRTV
QRVKKTVLVKQVVQVRRTPARRTRLPPPDRHPPVQQRMEHIQQEYEELLKLSEARRLQLE
DAIKLYSFFAECDDFDKWIRDKEKMLRTDEPQDSVDNAKRMYEKFVTDLSAASKRLESIE
AAAEELVAAEHGQAARAAARRQQLRQQWDRLLRLKQQKEKSLEGASSVELFNRTCDEALE
WMSEKERQLADGSASAADLRTVRALQRRHAQLERELQPLRDRLHTVTLLADSVKSQYPSE
RSNVEARQRQLCSSWERCEAQAAERRARLESAVGHQVFANGASQLQDWIQKIRSQVSSEV
RASDVATAESLLKDHQDVLDDIKAHKDEFKEVINLGQQLVATNPALTDVADTVKMLQQEQ
DAVMKEWQAKEQVLQQCLQLQSFNREADQIDAASGAHEAVLNYNDYGSSVDEAEAYLKRQ
EEVEARLSAQDERVAAFAARAHALIVAKPPHYAKEQLVLISSYHGSCAAPGPSLQGEELQ
QCLGLNQVIQSRCDSVVSRREAVRHAAAARRRALLANLAHHQVQYLMKNTDTQRTGPFLA
SVDELQTWIQDKTRTATDQSYRELANLERKLQKHEAFERELQANEKQLRNVESIGLSLQK
SDPGHAEEVSSRLQALQVAWAALVAASRDKGAKLRQASQQRIHRRSVEDAKARLAEVERA
LNSTELGSDLRSCKRLLLLHQALEQELSQCEQRAESLAAQGSDLVSSGHFDGAAIERDSA
ALLQAARALRPRAAERRQALETSLQLHKFAAEVSGELAWVSERQGAASSTTLPGDLHAAQ
AAQKKHAKLRAELEGRRPIVERVLHRGKELDTHPQAGKIKQLCKELEEAYSSVSSAAEER
AARLEAALKAQQFLHDAAEVDSWLADKAAALASADVGNDRHRATQLLTRHKAVELELDTY
AAIIAEMGHVAQSMASGGHPEGAALVTRHDQLAGSLARLQRLAASRQAALMESVCRHEYL
AESAELEEWVAEQQAAASSEDYGQDYEHLLVSNET