| New model in OGS2.0 | DPOGS208101 |
|---|---|
| Genomic Position | scaffold1581:- 669-11982 |
| See gene structure | |
| CDS Length | 2580 |
| Paired RNAseq reads | 1427 |
| Single RNAseq reads | 4969 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001818 (1e-38) |
| Best Drosophila hit | Nup98 (9e-67) |
| Best Human hit | nuclear pore complex protein Nup98-Nup96 isoform 2 (1e-56) |
| Best NR hit (blastp) | PREDICTED: nucleoporin 98kD [Oryctolagus cuniculus] (5e-79) |
| Best NR hit (blastx) | AGAP002351-PA [Anopheles gambiae str. PEST] (3e-68) |
| GeneOntology terms | GO:0005643 nuclear pore GO:0006911 phagocytosis, engulfment |
| InterPro families | IPR007230 Peptidase S59, nucleoporin |
| Orthology group | MCL10704 |
Nucleotide sequence:
ATGTTTCAAAAACAGACCTTCGGAGCCGCCAACACCGGCTTTGGATCTTTCAACGCCGGG
GCCAGTACATCATCACCGTTCAGTGGTTTCAAACCTGCGGCCAGCACCAGCGGCTTCGGA
GCAGCCCCGGCCTTCGGCGCCACCGCCGCCCAGCAACCGGCTACAGGCGGAGTCACCCGG
GTGACATTCACCTGGACACGTCCGTCAGCCGCCCGGAGTAACGCTTATAATGCACCAGGT
CTATTCGGCTCCACGAACACGTCGGGCGGTCTATTCGGGGGCACCACCTCCACCTCCTCC
GGCTTCGGCTCGTCCGGCTTCGGGTTCGGAGGGACCTCCAGCGGCGGGCTGTTCAACAAC
ACCAGCGGGGGACTGTTCGCCAACAACCAGAACACCAGCGCCTTCGGAGCTAAGCCTGCT
ACAGGGTTCGGGTTCGGTGCGGGCTCGGCCCCGGCCCCCAGCGGAGGCCTGTTCGGGTCC
CAGCCCTCCACCTCCACGGGGATCTTCGGCCAGCAGAACAATACCCTCGGGACGGGCCTG
TTCATTAACAGCGCCGCGTTCGGCTCCACGGGCTTCGGCACCAACACCTCGGGCTCCAGC
CTGTTCGGGAACAACACGTTCGGGAAACCGGCGACAACGACGCCCTCGTTCGGATTCAAC
ACACAACCTACCCTCGGTCTAGGCGGCGGCCTGGGCTCATCGTTCCAGTCCAAGCCGGCC
AACTCGGGCTTCGGCACACTGGGAGGGACGGGCTCTCTGTTCCAGCAGCCGGCTCAGAAC
ACCTTCAGAACCGACTCGGGCGTGGGCGGGGGTCTGTTCAACAACACCTTGGGCTCGCTG
GGCGCCACGCAAGTCAACAACGCCAGCGTCGCGGGGGCTCCGCTGGGCGGCTCGTCCAAC
GTGCACGAACAAATACTCACTCTAGTAGCGAGACCCTACGACACTCCGCTCTTCAAAGAC
CTCGCTCCGGACACAGCGACATCTACCGAGGAGGTGCTGAAGCCGACCAACCCCTCGGCG
GTGAGGGCGGTGCTGGACTCGTACAAGGTGTCGCCCAACAACAGGACCAGGGTCACGGTC
CGGCCCGGGCCTCACAAGCACGACAAGAAGTCTCTGTTCGACGGCCTGGAGGAGGGAGAC
GCCAGTGTGGAGGACAAGCTGACGACACGACCCAGCAGGAAGAGGCTCGTGCTGAGGAAC
AGGCCGCCAGCCGACAGGTCGCTGGAGGAGAGTCAACAGAACGGCGGCGAGGAGCGCCCG
GCGGCGGAACACGACAAGGTCGACGGCGAACACACGCAGAGCGACGCCGCGGCGAATCGG
CACGGCAGCTGGCTGTCGTCTCTGCCCCTGCGCCCTCTGCCGGGGTCTCTGGATGCGGAG
AGTTCCGTCAGGGAGCTGGTCCGGGGAGGCAGGGACAAAGTATCCGAGGAGGAGAATATT
CCCCCCCGGGAGGTCGCGCCCCACCCGGCCGGGGTCAAGCTGACGAGGCCGGGATACTAC
ACCATACCCAGCCTGGAGGAGATGACTGAGTATCTCCGACCCGATGGTTCCTGCCGCGTG
CCTCACCTCACCATCGGCAGGAAGAACTACGGGAACGTGTTCTACGACTGTGAGATCGAC
GTGGCCGGCCTCGACCTGGACCACCTGGTCCACTTCCTGAACAAGGAGGTGATCATCTAC
CCCGAGGACGAGGGGAAGCCGCCGGTCGGCTCGGGTCTCAACCGCCGGGCCGTGGTCACG
CTCGAGAGGGTCTGGCCCCGCGACAAGACCGAGAGGAGGCCCGTCACGGAACCCGACAGG
TTACTGAAGATGGACTACGAGGGCAAGCTGAGGCGGGTGTGTGACAAGCACGACACCAAG
TTCATAGAGTACAGGCCGCAGACGGGCAGCTGGGTGTTCAGGGTGGAACACTTCAGCAAG
TACGGCCTGACTGACTCGGATGAGGAGGACGACATCACACCCAACATACTCAAGAGACAG
CTGGTGGACCAGAACTTGCAGCAATCTGCAGCACGTGTGTGTGTGAAGAGCCCCACTAGT
GAGCTGGCCCGCCTGGAACACCGCGGCAGCCACCGCCTGCAGCTGATGAAGGCCAGCCTG
TACGCCGACGGCGCCGCGGACATGATGGAGGAGGTGTCCTCGTTCTCCGGGGACCAGCTG
GTGCCTCACGCGGCGATGACGTCACCACACCCCACCAGCGACACCATCCGGGAGGTGGTG
CAGACCGTGGACTCTACACAAGTGCAGCCGGAAGTGTCGGAGGTGATGGCGCGTCCCATA
ACAGTTCACCCTCACACTGTGGTGCTGAAGTACCACAAGAAGATACCACCCTTCAGGGAG
ACCATAGCCGGTGAGCTGAGACACACACGCACACAGTCGTATGTCAGCATCTTCCCTGGT
GGACCTGTCCGTGTCCCGGGCCCGCCTGTCTCGCTGGTGTGGCCGGCCAGGGGTCATGGT
GGTACACTCCACCACAGCCGCAGCCGACCACCTCCCACCAGGTTAGGCCCGCACACACAT
ACTGTGTGGATGACTGTTCTCCTGAACCTCACACACAGAGCACTCATAGGAAACGAATGA
Protein sequence:
MFQKQTFGAANTGFGSFNAGASTSSPFSGFKPAASTSGFGAAPAFGATAAQQPATGGVTR
VTFTWTRPSAARSNAYNAPGLFGSTNTSGGLFGGTTSTSSGFGSSGFGFGGTSSGGLFNN
TSGGLFANNQNTSAFGAKPATGFGFGAGSAPAPSGGLFGSQPSTSTGIFGQQNNTLGTGL
FINSAAFGSTGFGTNTSGSSLFGNNTFGKPATTTPSFGFNTQPTLGLGGGLGSSFQSKPA
NSGFGTLGGTGSLFQQPAQNTFRTDSGVGGGLFNNTLGSLGATQVNNASVAGAPLGGSSN
VHEQILTLVARPYDTPLFKDLAPDTATSTEEVLKPTNPSAVRAVLDSYKVSPNNRTRVTV
RPGPHKHDKKSLFDGLEEGDASVEDKLTTRPSRKRLVLRNRPPADRSLEESQQNGGEERP
AAEHDKVDGEHTQSDAAANRHGSWLSSLPLRPLPGSLDAESSVRELVRGGRDKVSEEENI
PPREVAPHPAGVKLTRPGYYTIPSLEEMTEYLRPDGSCRVPHLTIGRKNYGNVFYDCEID
VAGLDLDHLVHFLNKEVIIYPEDEGKPPVGSGLNRRAVVTLERVWPRDKTERRPVTEPDR
LLKMDYEGKLRRVCDKHDTKFIEYRPQTGSWVFRVEHFSKYGLTDSDEEDDITPNILKRQ
LVDQNLQQSAARVCVKSPTSELARLEHRGSHRLQLMKASLYADGAADMMEEVSSFSGDQL
VPHAAMTSPHPTSDTIREVVQTVDSTQVQPEVSEVMARPITVHPHTVVLKYHKKIPPFRE
TIAGELRHTRTQSYVSIFPGGPVRVPGPPVSLVWPARGHGGTLHHSRSRPPPTRLGPHTH
TVWMTVLLNLTHRALIGNE