New model in OGS2.0 | DPOGS210508  |
---|---|
Genomic Position | scaffold297:+ 10037-11305 |
See gene structure | |
CDS Length | 1269 |
Paired RNAseq reads   | 642 |
Single RNAseq reads   | 1806 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA012609 (6e-142) |
Best Drosophila hit   | pch2 (4e-62) |
Best Human hit | thyroid receptor-interacting protein 13 isoform 1 (3e-81) |
Best NR hit (blastp)   | AAA family ATPase [Bombyx mori] (8e-168) |
Best NR hit (blastx)   | AAA family ATPase [Bombyx mori] (1e-144) |
GeneOntology terms    | GO:0000166 nucleotide binding GO:0000239 pachytene GO:0001556 oocyte maturation GO:0001673 male germ cell nucleus GO:0005515 protein binding GO:0005524 ATP binding GO:0006302 double-strand break repair GO:0007131 reciprocal meiotic recombination GO:0007141 male meiosis I GO:0007144 female meiosis I GO:0007286 spermatid development GO:0017111 nucleoside-triphosphatase activity GO:0042802 identical protein binding |
InterPro families    | IPR003593 ATPase, AAA+ type, core IPR003959 ATPase, AAA-type, core |
Orthology group | MCL14659 |
Nucleotide sequence:
ATGAGTGCCCCCCTCCATGTTGAAGTAATACAGAAACGACAAAGCCGGGCTAGTAAGGAA
TATATCAAAGAGATTGTTCATTCTTATTTAACTAATTTTGTGTCTTTGACTCCAGGAGCT
TCAATAGGAAGTCATGAATTTGAAGATAATGTAGAGCTTAAAGAAAACGTACAGTGTATA
ACTTTCTGTGATGTAGAACACGAATCAGATTTGGCTATGACAGAGTGTGAGCTTTTGTAT
CATATATATACATTAGATAACTTTGGAGCAGAAACGGACACGATGACTGATGCCGCATCG
GGAGAAGAATTAGCAGCTGCCGATGTGTGGGCACTGCCTACGGAAGAGTTTCATGGTCTA
TGGGAAAGCCTCGTGTACGACTCGAAGCTCAAAGAAGACACACTGCGGTTTGTAGAAACT
GCATTCGAATTTGCCGATCGTGGTGTAGACTCAAACGTGATAGCCTGGAATCGCGTCGTG
CTACTTCACGGACCGCCGGGGACGGGCAAGACCAGCTTATGTCGAGCTCTAGCTCAGAAA
CTAGCCATCCGTCTGGGAGATCGCTTCCCGCGAGCCCGCCTCCTCGAGATAAACGCTCAC
GGACTGTTCAGCAAATGGTTCTCCGAAAGCGGCAAACTCGTCGCCAAACTTTTCGATCGG
ATTCGCGAAATAGTAGAAGATCGTCGCCTCCTAGCGTGCATCCTCGTCGATGAGGTGGAG
TCGCTGGCGCACGCTCGACGAGCCGCCCTCGCGGGTCTGGAGCCCTCGGACTCCATCCGG
GCCGTGAACGCCATCCTCACGCAGCTTGACCGACTCAAGAGACATCCCAACGCGCTCGTG
CTGACCACCTCCAACGTCACCGGAGCCATCGACGTCGCGTTCGTTGACCGCGCCGACATA
AAACGGCGCGTGGGCCCGCCCTCGGAGCGAGCCGCTTATGAGATCCTGCGAGGATGCTGC
GGCGAGCTGATGGCGCGGGGGGTGGTCGCACCTCGCGAGCAACTGTTCGCCCTGCGAGTG
TTAGAGGCTGCTCGCTTCGCGGAGACGGAAGGGTCGCGAGCCTCGCTGGCGCTGTGGGCG
GCGGCGCGGGCCTCGGCATCTGCGGGGTGCTCGGGCCGCGCTCTGCGCCGCCTGCCATTC
CTGGCCCGTGCGCTGCACACCAGAGGAGAGCCCTCACTGGCCGCGTTCATCGACGCCCTG
CTGGCGGCACTACAGCAGCAGCTCGCCGATACCAGGGCTCTCGAAGACGACACTCGTGGG
CCGCCCTAG
Protein sequence:
MSAPLHVEVIQKRQSRASKEYIKEIVHSYLTNFVSLTPGASIGSHEFEDNVELKENVQCI
TFCDVEHESDLAMTECELLYHIYTLDNFGAETDTMTDAASGEELAAADVWALPTEEFHGL
WESLVYDSKLKEDTLRFVETAFEFADRGVDSNVIAWNRVVLLHGPPGTGKTSLCRALAQK
LAIRLGDRFPRARLLEINAHGLFSKWFSESGKLVAKLFDRIREIVEDRRLLACILVDEVE
SLAHARRAALAGLEPSDSIRAVNAILTQLDRLKRHPNALVLTTSNVTGAIDVAFVDRADI
KRRVGPPSERAAYEILRGCCGELMARGVVAPREQLFALRVLEAARFAETEGSRASLALWA
AARASASAGCSGRALRRLPFLARALHTRGEPSLAAFIDALLAALQQQLADTRALEDDTRG
PP