| New model in OGS2.0 | DPOGS200585 |
|---|---|
| Genomic Position | scaffold1993:+ 11053-20066 |
| See gene structure | |
| CDS Length | 978 |
| Paired RNAseq reads | 1139 |
| Single RNAseq reads | 4557 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009552 (5e-36) |
| Best Drosophila hit | sarcoglycan beta (8e-37) |
| Best Human hit | beta-sarcoglycan (1e-13) |
| Best NR hit (blastp) | PREDICTED: similar to beta-sarcoglycan [Tribolium castaneum] (8e-68) |
| Best NR hit (blastx) | PREDICTED: similar to beta-sarcoglycan [Tribolium castaneum] (8e-61) |
| GeneOntology terms | GO:0008307 structural constituent of muscle GO:0016012 sarcoglycan complex GO:0016021 integral to membrane GO:0007010 cytoskeleton organization |
| InterPro families | IPR006875 Sarcoglycan complex subunit protein |
| Orthology group | MCL11797 |
Nucleotide sequence:
ATGGCTCCCGACCCTAGCGGAGGGTCGCCTTCAGACATGACGGATCATGTTGATAATCGC
GGCAAAGCTCTTTTGACACCTATCCCATCTAACAGCCAGGCCTTTCTTCATACTTTCGCT
AAGAACTACTCCGACAAAAACGGGAATGATGTCACCAGGGATGTCAGAAAGGGTCGCAGG
ACCTTCGTTTTCTGGATCCTCGTCTTCCTATTACTGGTGACGGCTGTTGGCAACCTCGTT
CTCACCTTCAGCATCCTTGGAGTTTTACGTCTTGGAAGCGGTCTGGAGAGCATGGAGTTC
CTCCCGCTTCATGACGCTGTGAAGTTCCTTGGGGACACGAATCTTGATAACATCTACAAG
AAGGACGGCCTGATTGAGAGCTTCCGGGACACGCCCTTGAGCATCACCAGCGAGAACGGA
TCAGTTCTGATAACACTTCAGACGAGGGCTCCTAGATCTGAGACCAAGCTCATAGTCAAC
ACCACGGGCGTGTTCATCAAGGGCGTCACCACTTTCAACATCAACGATCCCGACTCTGGC
GTCCAACTCTTCAGTTCTGGGAATCCAGAAGTAACTGTTAACGAAAATCTTAACAGTTTA
AACGCAAGACAAGTATCAACCAAGAGGATTTCGTCGCCGGTAGACGAGGACCTGGTGTTC
AGGTCGGACGCCTCCGCCTACCTGCGAGGGGCCGAGGGGACGCACATGGAATCCAAGGAG
TTATATTGGAGTGCTGACCAGGACATACATCTTAGATCCGCCAACGGTTCAGTGATACTC
AGCGGCAAGGAGGGAGTTTTCGTCGACGTGCGTTACCTCCCTATAGCCTTGCCGTCAAAA
GAACACCACGGCACTGGTCAGTTTAAAGTATGCGTTTGTATGCCTCAAGGCAAGCTGTTC
AGGATCGCTGTCCCCGACGGTCAGAGAGTCACATGCTCGCACATCAACACCACCGGCGAC
TTAAATCCTTGCGGGTAG
Protein sequence:
MAPDPSGGSPSDMTDHVDNRGKALLTPIPSNSQAFLHTFAKNYSDKNGNDVTRDVRKGRR
TFVFWILVFLLLVTAVGNLVLTFSILGVLRLGSGLESMEFLPLHDAVKFLGDTNLDNIYK
KDGLIESFRDTPLSITSENGSVLITLQTRAPRSETKLIVNTTGVFIKGVTTFNINDPDSG
VQLFSSGNPEVTVNENLNSLNARQVSTKRISSPVDEDLVFRSDASAYLRGAEGTHMESKE
LYWSADQDIHLRSANGSVILSGKEGVFVDVRYLPIALPSKEHHGTGQFKVCVCMPQGKLF
RIAVPDGQRVTCSHINTTGDLNPCG