New model in OGS2.0 | DPOGS211177  |
---|---|
Genomic Position | scaffold196:+ 116154-117687 |
See gene structure | |
CDS Length | 816 |
Paired RNAseq reads   | 335 |
Single RNAseq reads   | 974 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA003166 (2e-113) |
Best Drosophila hit   | transcription factor TFIIFbeta (1e-82) |
Best Human hit | general transcription factor IIF subunit 2 (8e-49) |
Best NR hit (blastp)   | PREDICTED: similar to Transcription initiation factor IIF subunit beta (ATP-dependent helicase TfIIF-beta) (TFIIF-beta) isoform 1 [Apis mellifera] (6e-108) |
Best NR hit (blastx)   | PREDICTED: similar to Transcription initiation factor IIF subunit beta (ATP-dependent helicase TfIIF-beta) (TFIIF-beta) isoform 1 [Apis mellifera] (2e-111) |
GeneOntology terms    | GO:0006366 transcription from RNA polymerase II promoter GO:0016986 transcription initiation factor activity GO:0004003 ATP-dependent DNA helicase activity GO:0005634 nucleus GO:0016251 general RNA polymerase II transcription factor activity GO:0006367 transcription initiation from RNA polymerase II promoter GO:0005674 transcription factor TFIIF complex GO:0008026 ATP-dependent helicase activity GO:0005524 ATP binding |
InterPro families    | IPR003196 Transcription initiation factor IIF, beta subunit IPR011991 Winged helix-turn-helix transcription repressor DNA-binding IPR011039 Transcription Factor IIF, Rap30/Rap74, interaction |
Orthology group | MCL14550 |
Nucleotide sequence:
ATGAGTAATTCCAATACAGTGCCCCATGTCGACCGTGAATTAGATTTGTCAAATACGGGA
AGAGGTGTCTGGCTGGTAAAGGTGCCGAAATATATTGCCAACAAATGGGACAAAGCTTCA
GGTGATATAGAAGTAGGTAAATTAAAGATATCTCGAGTTCCTGGTCAACGTGCTCAAGTC
CAGCTGTCGCTGTCGGAAGCTGTTTTATGTTTAAACGAACCCGGAGAACAAGCTTTACCT
AAGGAGCATCGCCTCGATGTATCTAATGTAACACGACAATCTTTAGGAGTTTTTTCTCAT
GCTGTTCCATCAAATACGGATACAGTGGTTCCTGAATCTGAAAAACTTTATATGGAAGGT
AGAATAGTGCAAAAATTAGAATGTAAGCCATATGCAGACCCAACTTATTACAAGCTTAAG
TCTGAATCAATAAGGAAGGCTTTGATGCCACAAAGACAAGTACAACAACTGAAAGGAATT
GTGCAAAATTTCAAACCTGTGTCTGACCACAAACATAATATTGACTATCAAGTAAAGAAG
AAAGCGGAAGGTAAAAAGGCTCGTGATGACAAGGAATCGGTGCTCAATGTTTTGTTTGCA
GCATTTGAGAAACACCAGTATTATAATATTAAGGATTTGCAAAATATAACAAGACAACCT
ATAGTATATTTGAAGGAAATATTAAAGGAGGTCTGCAATTATAATTTAAAGAATCCCCAT
AAGAATATGTGGGAATTGAAACCAGAGTACAGGCACTACAAACAGGAGGCCCCTGTTGAG
ACCAAAGAGGACCCTCAAAGTTCGGACAGCGACTAG
Protein sequence:
MSNSNTVPHVDRELDLSNTGRGVWLVKVPKYIANKWDKASGDIEVGKLKISRVPGQRAQV
QLSLSEAVLCLNEPGEQALPKEHRLDVSNVTRQSLGVFSHAVPSNTDTVVPESEKLYMEG
RIVQKLECKPYADPTYYKLKSESIRKALMPQRQVQQLKGIVQNFKPVSDHKHNIDYQVKK
KAEGKKARDDKESVLNVLFAAFEKHQYYNIKDLQNITRQPIVYLKEILKEVCNYNLKNPH
KNMWELKPEYRHYKQEAPVETKEDPQSSDSD