DPGLEAN01648 in OGS1.0

New model in OGS2.0DPOGS211177 
Genomic Positionscaffold196:+ 116154-117687
See gene structure
CDS Length816
Paired RNAseq reads  335
Single RNAseq reads  974
Migratory profilesQuery via corresponding ESTs
Best Bmobyx hitBGIBMGA003166 (2e-113)
Best Drosophila hit  transcription factor TFIIFbeta (1e-82)
Best Human hitgeneral transcription factor IIF subunit 2 (8e-49)
Best NR hit (blastp)  PREDICTED: similar to Transcription initiation factor IIF subunit beta (ATP-dependent helicase TfIIF-beta) (TFIIF-beta) isoform 1 [Apis mellifera] (6e-108)
Best NR hit (blastx)  PREDICTED: similar to Transcription initiation factor IIF subunit beta (ATP-dependent helicase TfIIF-beta) (TFIIF-beta) isoform 1 [Apis mellifera] (2e-111)
GeneOntology terms







  
GO:0006366 transcription from RNA polymerase II promoter
GO:0016986 transcription initiation factor activity
GO:0004003 ATP-dependent DNA helicase activity
GO:0005634 nucleus
GO:0016251 general RNA polymerase II transcription factor activity
GO:0006367 transcription initiation from RNA polymerase II promoter
GO:0005674 transcription factor TFIIF complex
GO:0008026 ATP-dependent helicase activity
GO:0005524 ATP binding
InterPro families

  
IPR003196 Transcription initiation factor IIF, beta subunit
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding
IPR011039 Transcription Factor IIF, Rap30/Rap74, interaction
Orthology groupMCL14550

Nucleotide sequence:

ATGAGTAATTCCAATACAGTGCCCCATGTCGACCGTGAATTAGATTTGTCAAATACGGGA
AGAGGTGTCTGGCTGGTAAAGGTGCCGAAATATATTGCCAACAAATGGGACAAAGCTTCA
GGTGATATAGAAGTAGGTAAATTAAAGATATCTCGAGTTCCTGGTCAACGTGCTCAAGTC
CAGCTGTCGCTGTCGGAAGCTGTTTTATGTTTAAACGAACCCGGAGAACAAGCTTTACCT
AAGGAGCATCGCCTCGATGTATCTAATGTAACACGACAATCTTTAGGAGTTTTTTCTCAT
GCTGTTCCATCAAATACGGATACAGTGGTTCCTGAATCTGAAAAACTTTATATGGAAGGT
AGAATAGTGCAAAAATTAGAATGTAAGCCATATGCAGACCCAACTTATTACAAGCTTAAG
TCTGAATCAATAAGGAAGGCTTTGATGCCACAAAGACAAGTACAACAACTGAAAGGAATT
GTGCAAAATTTCAAACCTGTGTCTGACCACAAACATAATATTGACTATCAAGTAAAGAAG
AAAGCGGAAGGTAAAAAGGCTCGTGATGACAAGGAATCGGTGCTCAATGTTTTGTTTGCA
GCATTTGAGAAACACCAGTATTATAATATTAAGGATTTGCAAAATATAACAAGACAACCT
ATAGTATATTTGAAGGAAATATTAAAGGAGGTCTGCAATTATAATTTAAAGAATCCCCAT
AAGAATATGTGGGAATTGAAACCAGAGTACAGGCACTACAAACAGGAGGCCCCTGTTGAG
ACCAAAGAGGACCCTCAAAGTTCGGACAGCGACTAG

Protein sequence:

MSNSNTVPHVDRELDLSNTGRGVWLVKVPKYIANKWDKASGDIEVGKLKISRVPGQRAQV
QLSLSEAVLCLNEPGEQALPKEHRLDVSNVTRQSLGVFSHAVPSNTDTVVPESEKLYMEG
RIVQKLECKPYADPTYYKLKSESIRKALMPQRQVQQLKGIVQNFKPVSDHKHNIDYQVKK
KAEGKKARDDKESVLNVLFAAFEKHQYYNIKDLQNITRQPIVYLKEILKEVCNYNLKNPH
KNMWELKPEYRHYKQEAPVETKEDPQSSDSD