New model in OGS2.0 | DPOGS210320  |
---|---|
Genomic Position | scaffold113:+ 104548-107257 |
See gene structure | |
CDS Length | 792 |
Paired RNAseq reads   | 11 |
Single RNAseq reads   | 45 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA011949 (9e-122) |
Best Drosophila hit   | CG10804, isoform C (2e-75) |
Best Human hit | orphan sodium- and chloride-dependent neurotransmitter transporter NTT73 isoform 1 (2e-47) |
Best NR hit (blastp)   | PREDICTED: similar to sodium- and chloride-dependent neurotransmitter transporter [Tribolium castaneum] (2e-100) |
Best NR hit (blastx)   | hypothetical protein TcasGA2_TC003133 [Tribolium castaneum] (6e-98) |
GeneOntology terms    | GO:0005328 neurotransmitter:sodium symporter activity GO:0005887 integral to plasma membrane GO:0006836 neurotransmitter transport GO:0005326 neurotransmitter transporter activity |
InterPro families   | IPR000175 Sodium:neurotransmitter symporter |
Orthology group | MCL30908 |
Nucleotide sequence:
ATGGCGAACACGGCACATTTGATGAGGCGACAGAGCTCGCGAGATTTGTACGCCCAACGA
TCTTTGGATAGAATGGAGATGAAGGAACTGAGAGGTCGGCTGGTGACCATGGAAAATGGA
CATCCCATACACCGCACCCACGTCATATACGGCGCCACCAATCAAGCCTTCGAGGACACG
AGCCCCAATAGAAGATCCTCTGAGACACCGACTAGCAAGGCCAGCTCTACAGAAGGTCCC
ACGGGCTTAAAGCCCGAAGGAGGCGAGTGCGAACGGGAATCTTGGGACAGCAAGTTGACG
TTCTTACTTGCGACCGTCGGATATGCTGTGGGTCTTGGTAACGTTTGGAGATTCCCCTAT
TTAGCACAGAAAAATGGCGGTGGAGCGTTCTTAATCCCGTATTTTGTGATGTTAGCTATT
GAGGGTATACCGATTTTTTATTTGGAGCTGGCCATCGGGCAAAGATTGAGGAAAGGCGCG
ATTGGTGTTTGGCACCAGGTCTCACCGTACTTGGGTGGGATTGGTATCAGCTCAGCTGTT
GTATCTTTCAACGTAGCGTTGTACTATAATTCCATCATCGCCTGGTGTCTGTTCTACTTT
GCGCAGAGTTTCCAAGCTGAGCTGCCTTGGTCGGAGTGCCCGAAAAAATACTTCACCAAT
GGTTCCTACATCAGCGAACCAGAATGTGCTGTCCTTGACAAACCACAGGACTTTGCCACA
CCCCAAGCGCATTCTGCCGGCATCCAGAGCGGTACGCCAGAAATTAAGAAATTGTTGGCG
GTAGATAATTAA
Protein sequence:
MANTAHLMRRQSSRDLYAQRSLDRMEMKELRGRLVTMENGHPIHRTHVIYGATNQAFEDT
SPNRRSSETPTSKASSTEGPTGLKPEGGECERESWDSKLTFLLATVGYAVGLGNVWRFPY
LAQKNGGGAFLIPYFVMLAIEGIPIFYLELAIGQRLRKGAIGVWHQVSPYLGGIGISSAV
VSFNVALYYNSIIAWCLFYFAQSFQAELPWSECPKKYFTNGSYISEPECAVLDKPQDFAT
PQAHSAGIQSGTPEIKKLLAVDN