| New model in OGS2.0 | DPOGS203791 |
|---|---|
| Genomic Position | scaffold21:+ 29557-34122 |
| See gene structure | |
| CDS Length | 852 |
| Paired RNAseq reads | 679 |
| Single RNAseq reads | 2055 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003697 (2e-105) |
| Best Drosophila hit | Sema-1a, isoform B (2e-76) |
| Best Human hit | semaphorin-5A precursor (3e-48) |
| Best NR hit (blastp) | RecName: Full=Semaphorin-1A; AltName: Full=Semaphorin-I; Short=Sema I; AltName: Full=Fasciclin-4; AltName: Full=Fasciclin IV; Flags: Precursor (5e-95) |
| Best NR hit (blastx) | RecName: Full=Semaphorin-1A; AltName: Full=Semaphorin-I; Short=Sema I; AltName: Full=Fasciclin-4; AltName: Full=Fasciclin IV; Flags: Precursor (6e-96) |
| GeneOntology terms | GO:0016021 integral to membrane GO:0007411 axon guidance GO:0005886 plasma membrane GO:0007416 synapse assembly GO:0030215 semaphorin receptor binding GO:0004872 receptor activity GO:0016199 axon midline choice point recognition GO:0005515 protein binding GO:0008039 synaptic target recognition GO:0048813 dendrite morphogenesis GO:0031987 locomotion involved in locomotory behavior GO:0001964 startle response GO:0048854 brain morphogenesis |
| InterPro families | IPR001627 Semaphorin/CD100 antigen IPR015943 WD40/YVTN repeat-like-containing domain |
| Orthology group | ND |
Nucleotide sequence:
ATGGCCGTCGCCAGGGCGGTCCTCATACTGCTAGCATCCACCGCCCAAGCGTGGATGCCC
GACGCAAACGCTCGAATCCATATCAAATATGGCGATGAAACTACGGAGCAGTTTGTGGGC
AATACGACAGGACCAAACCACTTCCGTATTTTAGACAAAGACGACTTCTCTATTTTAGTA
GGGGGCAGGAGTACGGTCTATAATCTCAGCCTCTACGATTTATCGGAAAATGTAGAACAG
CGAATAGAATGGCAATCTACTGTCGCACATCGAGAGCTATGTCTAATAAAGGGAAAATCG
GCGGACGATTGCCAAAACTATCTGCGAGTGGCGACTAGGGCTCACGGGCGATTGCTGGTC
TGTGGAACCAACGCTTTCAAACCCATGTGCCGGAGGTACGCCAGGCATCCCCCCAACCAC
TCGCTCGAAGAGTTCGATGGAACCGGCAGATGTCCATACAACCCGCAACACAATTCAACT
GCCATATTCACAGATGGTCATCTATATACTGCGACGGCTGCAGATTTTTCGGGCTCCGAA
CCCTTAATATACCGAGAACCAGTAAGGACCGAACACTCAGATTTACGATTATTAAACGAT
CCCTCATTTGTCGGAGCAGTGGCTTCAACGAGCCACGTTTACTTCTTTTATCGTGAGACT
GCTGTCGAGTACATGAACTGCGGAAAGTCGGTATATTCGAGGGTCGCAAGAGTATGTCTA
AATGATAAAGGTGGTCCACACCCTTTTAACGATAGATGGACATCATTTCTCAAAGCCCGA
CTAAACTGCTCAATACCTGGGGAATATCCGTTCTACTTCGATGAAATACGTAAGTTTTGC
TCTCTGGATTAA
Protein sequence:
MAVARAVLILLASTAQAWMPDANARIHIKYGDETTEQFVGNTTGPNHFRILDKDDFSILV
GGRSTVYNLSLYDLSENVEQRIEWQSTVAHRELCLIKGKSADDCQNYLRVATRAHGRLLV
CGTNAFKPMCRRYARHPPNHSLEEFDGTGRCPYNPQHNSTAIFTDGHLYTATAADFSGSE
PLIYREPVRTEHSDLRLLNDPSFVGAVASTSHVYFFYRETAVEYMNCGKSVYSRVARVCL
NDKGGPHPFNDRWTSFLKARLNCSIPGEYPFYFDEIRKFCSLD