| New model in OGS2.0 | DPOGS203791 |
|---|---|
| Genomic Position | scaffold21:+ 38680-41516 |
| See gene structure | |
| CDS Length | 1809 |
| Paired RNAseq reads | 1620 |
| Single RNAseq reads | 4346 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003697 (0.0) |
| Best Drosophila hit | Sema-1a, isoform A (1e-106) |
| Best Human hit | semaphorin-6A precursor (3e-58) |
| Best NR hit (blastp) | RecName: Full=Semaphorin-1A; AltName: Full=Semaphorin-I; Short=Sema I; AltName: Full=Fasciclin-4; AltName: Full=Fasciclin IV; Flags: Precursor (4e-153) |
| Best NR hit (blastx) | RecName: Full=Semaphorin-1A; AltName: Full=Semaphorin-I; Short=Sema I; AltName: Full=Fasciclin-4; AltName: Full=Fasciclin IV; Flags: Precursor (8e-150) |
| GeneOntology terms | GO:0016021 integral to membrane GO:0007411 axon guidance GO:0005886 plasma membrane GO:0007416 synapse assembly GO:0030215 semaphorin receptor binding GO:0004872 receptor activity GO:0016199 axon midline choice point recognition GO:0005515 protein binding GO:0008039 synaptic target recognition GO:0048813 dendrite morphogenesis GO:0031987 locomotion involved in locomotory behavior GO:0001964 startle response GO:0048854 brain morphogenesis |
| InterPro families | IPR001627 Semaphorin/CD100 antigen IPR016201 Plexin-like fold IPR015943 WD40/YVTN repeat-like-containing domain IPR003659 Plexin/semaphorin/integrin IPR002165 Plexin |
| Orthology group | MCL10173 |
Nucleotide sequence:
ATGGAACCTTATTTCACGACTTTAAAAATAACTAAAGCCATAAATTACCTAACCCATGGT
CATCTATATACTGCGACGGCTGCAGATTTTTCGGGCTCCGAACCCTTAATATACCGAGAA
CCAGTAAGGACCGAACACTCAGATTTACGATTATTAAACGATCCCTCATTTGTCGGAGCA
GTGGCTTCAACGAGCCACGTTTACTTCTTTTATCGTGAGACTGCTGTCGAGTACATGAAC
TGCGGAAAGTCGGTATATTCGAGGGTCGCAAGAGTATGTCTAAATGATAAAGGTGGTCCA
CACCCTTTTAACGATAGATGGACATCATTTCTCAAAGCCCGACTAAACTGCTCAATACCT
GGGGAATATCCGTTCTACTTCGATGAAATACAAGCTACTACTGAAATTATTAATGGTGTT
TATGGCAACGGCGGTAACAGGAATGATATAGTTTATGCTGTGTTTACAACACCACAAAAC
GCAATCGGTGGTTCGGCAGTATGTGCATTTGCGATGAGAGATATTTTAGACGCTTTCGAA
GGACCATTTAAAGGACAGAAAAATATGAACTCGAACTGGCTACAATTGCCAAAAGAAAAA
GTTCCCCAACCACCGCAACCAGGGTCGTGCGTAGAAGATAGTAGAACACTTTCGGATTCA
GCCATCAATTTTATTAAAACACATCCACTGATGGATAAAGCTGTTCCGTCATTTTTAGCA
CGACCGATTCTTATAAGAGTCAGTTTACAGTATAGGTTTTCAGCGATCGCTATCCACCCT
CAAGTGCAGTCAATGAATGGCAACAAATACGACGTTATGTACGTCGGTACAGATGACGGC
AGGGTCATAAAAGCTGTGAATGTAGCTTCTAACGAGGGCGTATTCGATGCTAGTATGGAT
GAATATGGTAAAAATCCAGTAAGAACAGCAGTAATATCCGAGGTCCAAGTACTGCCACCC
GGCGTACCAATCAAACAAATGCATGTAGCTCTCACTACCGAGAAGTTAATCGTATCTTCC
GGCGACATGATAAAAGCCATAACGTTATCTCACTGTGCTAACGTGCAATCGTGCAGAGAA
TGCGTGGGACTGCAAGATCCTCATTGTGCTTGGGATTCCAAACAGCAGCAATGCTCTTGG
GTTGGAAACAGACAATTTCCAAATCCGGAAAGATTTTTACAAAACATAGAAACCGGCAAG
ACTGATATTTGCAATAAATTACCTAGTTTATTACCGAGTGACCGTCACGCGAACCGAAAT
CCTGTAACGAAAAAGCCTCAGTCCGACCCGAATCCACATCAACCAAATAACGATATACAA
AATGAAATTCTTATTGAAGTAGTCGAAACTAACGTCCTGTCTGAAGACAAAGACACTAGC
AATAATAAGCACGAAACAGATTTACTAACAGTCGAAGCAGCGGGCAACATCTACAGTGCT
CAGGCGTTGCTTACCGCGGTAGTCGCCTCCTGTCTCGTCACTCTCATGGTCGGCTTCGTC
ATCGGATACCTCTTCTCCAGAAGATTCAGACACCCTTTCTTCACTGACACCTCTCCCTTT
AATGAGCAGCATAATCAATTGAATCGACTGAGCCCATTAGAAACGCCTTTAAATGTGAAC
TCGGGCTACATGCCGCCGAGGTCAAAAAACGTGAACATTGTAGCTAATGTTTGCCCTCTA
GCAAAGCAGGACAATCTGCATCTCGAGCTGGGTAAAGAACGGACTCTCGACCTTCGCAAC
TCCACCGAGTCCCTCGACAAGGACCTCAAGTGTGGTACCCTACAAAAAGTCAAAAAGACT
TACATATGA
Protein sequence:
MEPYFTTLKITKAINYLTHGHLYTATAADFSGSEPLIYREPVRTEHSDLRLLNDPSFVGA
VASTSHVYFFYRETAVEYMNCGKSVYSRVARVCLNDKGGPHPFNDRWTSFLKARLNCSIP
GEYPFYFDEIQATTEIINGVYGNGGNRNDIVYAVFTTPQNAIGGSAVCAFAMRDILDAFE
GPFKGQKNMNSNWLQLPKEKVPQPPQPGSCVEDSRTLSDSAINFIKTHPLMDKAVPSFLA
RPILIRVSLQYRFSAIAIHPQVQSMNGNKYDVMYVGTDDGRVIKAVNVASNEGVFDASMD
EYGKNPVRTAVISEVQVLPPGVPIKQMHVALTTEKLIVSSGDMIKAITLSHCANVQSCRE
CVGLQDPHCAWDSKQQQCSWVGNRQFPNPERFLQNIETGKTDICNKLPSLLPSDRHANRN
PVTKKPQSDPNPHQPNNDIQNEILIEVVETNVLSEDKDTSNNKHETDLLTVEAAGNIYSA
QALLTAVVASCLVTLMVGFVIGYLFSRRFRHPFFTDTSPFNEQHNQLNRLSPLETPLNVN
SGYMPPRSKNVNIVANVCPLAKQDNLHLELGKERTLDLRNSTESLDKDLKCGTLQKVKKT
YI