| New model in OGS2.0 | DPOGS200503 |
|---|---|
| Genomic Position | scaffold6491:- 4146-6147 |
| See gene structure | |
| CDS Length | 645 |
| Paired RNAseq reads | 970 |
| Single RNAseq reads | 2876 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007121 (3e-08) |
| Best Drosophila hit | iron regulatory protein 1B (1e-81) |
| Best Human hit | cytoplasmic aconitate hydratase (4e-68) |
| Best NR hit (blastp) | iron regulatory protein 1 [Manduca sexta] (8e-98) |
| Best NR hit (blastx) | iron regulatory protein 1 [Manduca sexta] (2e-96) |
| GeneOntology terms | GO:0003729 mRNA binding GO:0005506 iron ion binding GO:0003994 aconitate hydratase activity GO:0006447 regulation of translational initiation by iron GO:0051539 4 iron, 4 sulfur cluster binding GO:0030350 iron-responsive element binding |
| InterPro families | IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha IPR018136 Aconitase family, 4Fe-4S cluster binding site IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 IPR015934 Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase IPR015937 Aconitase/isopropylmalate dehydratase |
| Orthology group | ND |
Nucleotide sequence:
ATGGCTGGTTTGTGGTTTTCCCTTTGCGCTCTGGCTACCGAAAGACTAAACGCTTCACAT
ATGATTTCTCCAATCCCACTAAAAGTGGGCTTCAAGGGGTACGGGCTTACTCCCGCGCAA
CTCACCTCGTCGGGCAGTTTCTCGTACAGCGACGGGAACACTTACTCCATCACACACGGC
TCGGTCATTATAGCCGCGATCACGTCCTGCACCAACACCTCCAACCCGAGCGTCATGTTG
GGTGCCGGTTTGCTAGCAAAGAAGGCTGTGGAGAACGGTTTGTCCGTCCTTCCATACATC
AAGACCTCGTTGTCGCCAGGGTCTGGTGTAGTCACGTATTATCTGAAGGAATCCGGCGTG
GTTCCGTACCTGGAAAAGTTGGGTTTCGACATCGTGGGCTACGGCTGCATGACGTGCATC
GGGAACTCGGGACCCATAGACGACAACATCGCCAACACCATAGAGAAGAACGAGTTGGTT
TGCTGCGGCGTGCTCTCCGGCAACAGAAACTTTGAAGGTCGGATCCATCCAAACACGAGA
GCTAATTACCTAGCGAGCCCCCTGCTGGTCATCGCATATGCTTTGGCCGGTACTGTTGAC
ATCGACTTCGAGAAGCAACCGCTGGGTGAGTGTCGCATAGAGTAA
Protein sequence:
MAGLWFSLCALATERLNASHMISPIPLKVGFKGYGLTPAQLTSSGSFSYSDGNTYSITHG
SVIIAAITSCTNTSNPSVMLGAGLLAKKAVENGLSVLPYIKTSLSPGSGVVTYYLKESGV
VPYLEKLGFDIVGYGCMTCIGNSGPIDDNIANTIEKNELVCCGVLSGNRNFEGRIHPNTR
ANYLASPLLVIAYALAGTVDIDFEKQPLGECRIE