New model in OGS2.0 | DPOGS212522  |
---|---|
Genomic Position | scaffold2044:+ 14754-19222 |
See gene structure | |
CDS Length | 888 |
Paired RNAseq reads   | 642 |
Single RNAseq reads   | 1807 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA009791 (9e-91) |
Best Drosophila hit   | Start1, isoform B (6e-18) |
Best Human hit | stAR-related lipid transfer protein 3 isoform 1 (8e-21) |
Best NR hit (blastp)   | carotenoid-binding protein [Bombyx mori] (2e-108) |
Best NR hit (blastx)   | carotenoid-binding protein [Bombyx mori] (1e-105) |
GeneOntology terms    | GO:0008289 lipid binding GO:0005737 cytoplasm GO:0006629 lipid metabolic process GO:0015485 cholesterol binding GO:0016020 membrane GO:0016021 integral to membrane GO:0008203 cholesterol metabolic process GO:0006694 steroid biosynthetic process GO:0006869 lipid transport GO:0006839 mitochondrial transport GO:0031902 late endosome membrane GO:0005768 endosome GO:0008202 steroid metabolic process GO:0017127 cholesterol transporter activity |
InterPro families    | IPR002913 Lipid-binding START IPR023393 START-like domain |
Orthology group | MCL11042 |
Nucleotide sequence:
ATGGCATCGAGCTCGGAAAATGTCGATCAAAAGGAGGTAGAAATAGAAAAGCATATTCAA
CAGCTAGAGAATGTTGGAACTGAAGAAGAATTAGAGAAGAAATTGAACAGTATGAATAAG
TTTGGTTTCTCTGTAGCGAATTGGATGAAGATTCTGTTCAACAGAGAGAGTACTGAACCT
TTTAAAGCCGAATGGCTGACTATAGATGAATACAAACAGATGGCAGAGGAGAGTATGGCG
AACGCCTGGAACACTATCAACCTGGAGGACTGGAGGCTGGAGAAGCGAGGTTCAGTTAAA
GGAGACGTGGTCGAGTCGAAACAGACCGAGCAGTTCGGGAAGGTTTACAGGTTTACGGGT
ATGGTCTCTTGCCCAGCAAAATTTCTGTATGAAGAATTCAAAACGAACCTCACAAAGCTT
CCGGAATGGAATCCGACAATATTGAAGAGCGAATTGATCAAGGAAATCGGGCCGGGCATC
GATCTGTCCTACCAAGTGACAGCCGGCGGTGGCCGGGGTATAATTGCGCCCCGCGACTTC
GTCATACTCAGACGGACGGCCGCCCTTAATAAGATGGGGAAATTGGACGATAATGACCCC
TACTGTTATATTAGCAGTGGGGTCAGTGTCACTGTGCCGGGATACCCGCCATGCAATGAT
CTGGTTAGAGGTCACAATAAAGTGGGCTGCTGGCGCATGACTCCCAAGATGGTGGAAGTA
AATAATAAAATGGAGCAACAAACTGTCTTCCAATGGCTGATGTGCTGTGACCTTAAAGGT
AAAATACCCCAATTTGTGCTGGATGCGGCCTTCGCCTCAGTGATGTTGGACTACATCATA
CATGTCAGAAAATATGCAGCGGAAAGCAAAGCCAAGGGACTCTTCTAA
Protein sequence:
MASSSENVDQKEVEIEKHIQQLENVGTEEELEKKLNSMNKFGFSVANWMKILFNRESTEP
FKAEWLTIDEYKQMAEESMANAWNTINLEDWRLEKRGSVKGDVVESKQTEQFGKVYRFTG
MVSCPAKFLYEEFKTNLTKLPEWNPTILKSELIKEIGPGIDLSYQVTAGGGRGIIAPRDF
VILRRTAALNKMGKLDDNDPYCYISSGVSVTVPGYPPCNDLVRGHNKVGCWRMTPKMVEV
NNKMEQQTVFQWLMCCDLKGKIPQFVLDAAFASVMLDYIIHVRKYAAESKAKGLF