New model in OGS2.0 | DPOGS208430  |
---|---|
Genomic Position | scaffold1532:+ 49364-54180 |
See gene structure | |
CDS Length | 1155 |
Paired RNAseq reads   | 163 |
Single RNAseq reads   | 490 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA009037 (5e-71) |
Best Drosophila hit   | argonaute 3, isoform D (2e-33) |
Best Human hit | piwi-like protein 2 (7e-26) |
Best NR hit (blastp)   | AGO3 [Bombyx mori] (5e-125) |
Best NR hit (blastx)   | AGO3 [Bombyx mori] (1e-106) |
GeneOntology terms    | GO:0005737 cytoplasm GO:0003723 RNA binding GO:0035194 posttranscriptional gene silencing by RNA |
InterPro families   | IPR003100 Argonaute/Dicer protein, PAZ |
Orthology group | ND |
Nucleotide sequence:
ATGGCTGATGCTGGGAGGGGTCGCGGTCGGGGCCTTGCCTTGCTTCAGGCGCTTAAAGCA
CGAATGACTGAGTCACCAGCCTCTCAGGAACCAAGTCAAGACCCCTCTGCACCACCAAGT
GTTGCTGCAACACCAAATGTTGCTGTAAAACCCAATTTGGTGCCTGACACAGCATCCAGT
GCAGCCCCAAGTAATGTTAGTTCAACAAGTACTATACCTGGGGGAAGAGGGAAAATGGCA
GCAATGCTGCTGTCCAAAATCCAGAAACCTGGAGTTGATAAGCCTATGTTCAGTCCAGCA
TCTGATGTGAGTCCAAGCCCGAGTATGGTGGGACAAGGGGTTGGACGTGGACTACAGCTT
CTGCAGAATTTGAGAAAGCAAACTTCTGCAAGTTCAACCGTAGACTCGAGTGTAGAAAAT
ATAACAAAAGGTCTTGCAGCTTCCTCTGTATCTTCAGCTAATTTACCCGGAGGGAAGAAC
AAATATTATAGTGAAATCAGTCAAACAGAGCCAGTGGTTATGAAGGGAGAGAGCGGTACT
CCGTGTGACCTCACAGCCAACTTTATATATCTTAAATATAAAGACAACAGTGTGTTCGAA
TACGAAGTGAGATATGAACCAGATCAGGATTACAAGCATTTGAGATTTAAACTTCTAAAT
GAACATAATCACTTCTTCCAACAGAAGGCATTTGACGGCACAACTCTTTACGTACCTCAC
AAATTGCCAGACGAAGCTCTCAATTTAGTTTCAACCAATCCTTATGATGATAGTAAAGTT
AATATAACTATTTTATATCGTCGCCCTCGTCTCCTCCGTGAAATGATACATATATATAAT
ATGCTGTTTAAACATATAATGAGAGATCTGAATCTTGTGAGGTTCGGACGACAGCACTAT
AATGAGAATGCTGCAATACAAATACCACAATATAAACTTGAAGTATGTCCAGGTTATGTG
ACAGCGGTTGATGAGTATGAAGGTGGTCTCATGTTGACTCTAGACTCGACTCATCGTGTG
CTTCGTACACAGACTGTGTTGTCACTGATCAAGGAGACCGTTCAGACTCAAGGGGCTGCA
TGGAAGAGATATATTAGTGATGCACTCATCGGAACATCAGTTATGACCACATATAATAAA
AAACTGTTTCGGTAA
Protein sequence:
MADAGRGRGRGLALLQALKARMTESPASQEPSQDPSAPPSVAATPNVAVKPNLVPDTASS
AAPSNVSSTSTIPGGRGKMAAMLLSKIQKPGVDKPMFSPASDVSPSPSMVGQGVGRGLQL
LQNLRKQTSASSTVDSSVENITKGLAASSVSSANLPGGKNKYYSEISQTEPVVMKGESGT
PCDLTANFIYLKYKDNSVFEYEVRYEPDQDYKHLRFKLLNEHNHFFQQKAFDGTTLYVPH
KLPDEALNLVSTNPYDDSKVNITILYRRPRLLREMIHIYNMLFKHIMRDLNLVRFGRQHY
NENAAIQIPQYKLEVCPGYVTAVDEYEGGLMLTLDSTHRVLRTQTVLSLIKETVQTQGAA
WKRYISDALIGTSVMTTYNKKLFR