| New model in OGS2.0 | DPOGS214155 |
|---|---|
| Genomic Position | scaffold323:+ 148110-153210 |
| See gene structure | |
| CDS Length | 2091 |
| Paired RNAseq reads | 646 |
| Single RNAseq reads | 1786 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA006201 (5e-70) |
| Best Drosophila hit | CG4901 (3e-147) |
| Best Human hit | putative ATP-dependent RNA helicase DHX33 isoform 1 (4e-145) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC013109 [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC013109 [Tribolium castaneum] (1e-170) |
| GeneOntology terms | GO:0004004 ATP-dependent RNA helicase activity GO:0000390 spliceosome disassembly GO:0005681 spliceosomal complex GO:0004386 helicase activity GO:0005524 ATP binding GO:0003676 nucleic acid binding |
| InterPro families | IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site IPR014001 DEAD-like helicase IPR001650 Helicase, C-terminal IPR007502 Helicase-associated domain IPR011709 Domain of unknown function DUF1605 IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
| Orthology group | MCL13013 |
Nucleotide sequence:
ATGGATTCTAAGTACGCTTCCATAGGGAGAGAAAAACCGAAAATTACAAACGATTTAACA
GTTAAAAGGTTAAAACTATGTGTTAATAACGCAAACACAAAAAAAGATAAAGAGCAGACA
ACCAATGGAGCAACCAATAATAATAAACTTGAAAATAATTTTCCTAAAGAGAACACAGAA
GACCTCAAGGAAGCTAGAAAATCATTACCTGTTTATTTAGTGCGAACCAGAATTATAGAA
GAAATAAAAAAACATGATACAATGATATTAATTGGTGAGACAGGAAGTGGTAAGACCACA
CAAATACCTCAGCTTATTCATGAATATCGACTAGAGGGTAAGAGTTGTGTGGCTGTGACA
CAACCGAGAAGGGTGGCTGCAATCACTTTAGCTTTACGAGTGGCAGCTGAAATGAATACT
GATATTGGATCTATAGTTGGGTATTCAGTAAGATTTGAAGATGTAACAAGTCCAAGAACG
AAAGTAAAATATTTGACAGATGGAATGTTATTGAGAGAAGCTGTAACAGATCCATTGCTG
AAGAAATATTCCATTATTGTGTTAGATGAAGCCCATGAACGCACTGTAAATACAGATGTC
TTATTTGGAATTGTTAAACTCGCCCAAAAGGAAAGAAATGGACAGAAACAAAATCCGCTA
AAGGTTATAGTTATGTCGGCGACAATGGATGTGGATTCTTTTAGAAAATATTATGATAAT
TGTCCTGTTATATACTTAGAGGGTAGAACTTACCCTGTAACAATTTATCACTCTAAGATT
AAACATGAGGATTATCAGTATGCTGCTATATGTACAATATTCCAGCTACATACAACAACT
CCAGCCAATGAAGATTTCCTTGTGTTTTTAACTGGACAGGAAGAAATTGAAACAGTTATG
TCCAATATAAAGCAAATAGCTAAAGAAACTGTTGGTCCTCAAATACGAGTATGTCCTCTA
TATGCTGGTTTACCCGCCGCTAAACAGTTGTTGGTATGGAAAAAAACACCCCCTGGAATG
AGAAAAATTGTGTTAGCAACAAACATAGCTGAAGCTTCTGTGACGATACCAGAAATAAGA
TATGTTATCGATACGGGTGTTGTAAAAGAGAGGACGTGGTGTACTCGTACCGGTGCTGAG
CGTTTGTCAGTGGTGCCGTGTTCTCAGGCGGCTTCCTGGCAGCGAGCGGGGCGCGCTGGA
CGGACTGCAGCCGGCGCCTCCTACAGACTATACACAGCCACCGATTTTAAATGCAGGCGG
CAACACAACATACCGGAAATAGTACGTTGTCCGCTCACGTCAACAGTGCTGATGTTGATA
GCAACTGGCTTGGATCCCGGGACATTTCCATTGATAGACACGCCGCCGAAAGATTCGATA
CATGCTGCTTTATTGTTATTAAAAGAATTAGGTGCCGTAGATAATGAAAGTAATCCAAAA
TTAACGGTTCTCGGAAAGAAGATGACGGCATTCCCAATAGACCCAAAATATGCCAAGATC
CTTTTATGTGCTCCAGAGTATGGATGTTTGGAAGAGGCTCTGAGCTTGGTGGCGGTAATG
TCCAGCGAAAATGTGTTTCACACGCCATTACACAAAAGGGAAGACGCTTTGAAAGTAAAG
CAAAAATTTATATCGCCTCTCGGAGATCATATCACGCTTCTAAACGTTTATAGAGCGTTC
TGTAAGGCGCCTCTTAAAAAGCAATGGTGCCGTGAAAACTATTTGAATCACAAGAATTTG
TCTTACGCTTTTGATGTACGTCAGCAGTTACTGCTAGTTTGCCAGCGATTAAATTTGGCA
GTATCGAGTTGTGGAAATGCCACGGATCAGTTGCTGAAGTGTCTGCTGAGCGGTCTGTTC
ACGAACTGCGCGTGGTCCCGGGCGGGCGGGCGGTACGTGACGAGTGCGGGCGCGGCGGCG
TCTCTGCACCCGTCCAGCGTGCTGCACGGACGTTCTGCGAACCCTGCACTAGTGTACACG
GAGTTACTGCACACGCAGCGGTCGTTCTTAATCAACGTGTCCGTGGTGCAACCGCAGTGG
CTGCAGCAGGTTGCGCCCGAATACGCCAGGCGGTGTCGCTCGAACCGGTGA
Protein sequence:
MDSKYASIGREKPKITNDLTVKRLKLCVNNANTKKDKEQTTNGATNNNKLENNFPKENTE
DLKEARKSLPVYLVRTRIIEEIKKHDTMILIGETGSGKTTQIPQLIHEYRLEGKSCVAVT
QPRRVAAITLALRVAAEMNTDIGSIVGYSVRFEDVTSPRTKVKYLTDGMLLREAVTDPLL
KKYSIIVLDEAHERTVNTDVLFGIVKLAQKERNGQKQNPLKVIVMSATMDVDSFRKYYDN
CPVIYLEGRTYPVTIYHSKIKHEDYQYAAICTIFQLHTTTPANEDFLVFLTGQEEIETVM
SNIKQIAKETVGPQIRVCPLYAGLPAAKQLLVWKKTPPGMRKIVLATNIAEASVTIPEIR
YVIDTGVVKERTWCTRTGAERLSVVPCSQAASWQRAGRAGRTAAGASYRLYTATDFKCRR
QHNIPEIVRCPLTSTVLMLIATGLDPGTFPLIDTPPKDSIHAALLLLKELGAVDNESNPK
LTVLGKKMTAFPIDPKYAKILLCAPEYGCLEEALSLVAVMSSENVFHTPLHKREDALKVK
QKFISPLGDHITLLNVYRAFCKAPLKKQWCRENYLNHKNLSYAFDVRQQLLLVCQRLNLA
VSSCGNATDQLLKCLLSGLFTNCAWSRAGGRYVTSAGAAASLHPSSVLHGRSANPALVYT
ELLHTQRSFLINVSVVQPQWLQQVAPEYARRCRSNR