New model in OGS2.0 | DPOGS209911  |
---|---|
Genomic Position | scaffold82:+ 338686-339360 |
See gene structure | |
CDS Length | 675 |
Paired RNAseq reads   | 191 |
Single RNAseq reads   | 768 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA004151 (2e-78) |
Best Drosophila hit   | Sox box protein 14, isoform B (7e-27) |
Best Human hit | transcription factor SOX-11 (4e-26) |
Best NR hit (blastp)   | PREDICTED: similar to Putative transcription factor SOX-14 [Tribolium castaneum] (4e-43) |
Best NR hit (blastx)   | hypothetical protein TcasGA2_TC008936 [Tribolium castaneum] (7e-37) |
GeneOntology terms    | GO:0045449 regulation of transcription GO:0006350 transcription GO:0003677 DNA binding GO:0050821 protein stabilization GO:0002328 pro-B cell differentiation GO:0045944 positive regulation of transcription from RNA polymerase II promoter GO:0016563 transcription activator activity GO:0007507 heart development GO:0030217 T cell differentiation GO:0060070 canonical Wnt receptor signaling pathway GO:0030177 positive regulation of Wnt receptor signaling pathway GO:0005634 nucleus GO:0001666 response to hypoxia GO:0031017 exocrine pancreas development |
InterPro families    | IPR000910 High mobility group, HMG1/HMG2 IPR009071 High mobility group, superfamily |
Orthology group | MCL19620 |
Nucleotide sequence:
ATGAATGCGTTTATGGTTTGGTCTCAAATCGAACGCAGAAAAATTTGCGAACAAACTCCA
GATATGCATAATGCAGAAATTTCTAAGAACTTAGGGCGAGTTTGGAAAACGCTAAACGAT
GAGGAAAGGCAGCCTTTTATAGATGAAGCAGAAAGGCTGAGACAACTGCATATGCGCGAG
TACCCTGATTATAAATATAGGCCTCGCAAGAAAACAGCAAAACCTGCACAAAGAAGTGGT
GCAATAACCAAGCAGAAGCGTAAACAAAGAGCTGACAGTAACAACAACAGAGGTGTATCC
AGACGGAGAACGCGGACGGTCCCAAGCATCTCCAGTGTTCCAATGGAAACGCCAGCTCCT
CCACCACTGCCAGCATCCCCAGCGGGATCGCCGGATTCTCCTGAATCTGCGTGTTTCTAC
GACGATAACACGAAACGCGATCAATCAGACCTAACTGAACTTTATTCAATTACGGATTTA
TTTACGTTACCAGCAGACTGTGAAGTTGATCTAGACGCGTTGACGGAAATGGAGGACTTT
GAGACGGCATCTTCTTCGTCAGGATCACACTTTGAGTTCTCATGCACGCCGGACGTGTCT
GATATGCTCAGTGAGATTGGCGTAGCAGGGGATTGGGATGACCCTACTTTCTCATCGTAC
CTTACGTCGTCTTAA
Protein sequence:
MNAFMVWSQIERRKICEQTPDMHNAEISKNLGRVWKTLNDEERQPFIDEAERLRQLHMRE
YPDYKYRPRKKTAKPAQRSGAITKQKRKQRADSNNNRGVSRRRTRTVPSISSVPMETPAP
PPLPASPAGSPDSPESACFYDDNTKRDQSDLTELYSITDLFTLPADCEVDLDALTEMEDF
ETASSSSGSHFEFSCTPDVSDMLSEIGVAGDWDDPTFSSYLTSS