| New model in OGS2.0 | DPOGS204627 |
|---|---|
| Genomic Position | scaffold4243:+ 13564-15369 |
| See gene structure | |
| CDS Length | 1050 |
| Paired RNAseq reads | 285 |
| Single RNAseq reads | 726 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA009495 (3e-154) |
| Best Drosophila hit | replication factor C subunit 4 (2e-126) |
| Best Human hit | replication factor C subunit 2 isoform 1 (7e-122) |
| Best NR hit (blastp) | replication factor C subunit 2 [Bombyx mori] (2e-165) |
| Best NR hit (blastx) | replication factor C subunit 2 [Bombyx mori] (2e-149) |
| GeneOntology terms | GO:0007076 mitotic chromosome condensation GO:0000819 sister chromatid segregation GO:0006281 DNA repair GO:0006271 DNA strand elongation involved in DNA replication GO:0006260 DNA replication GO:0005663 DNA replication factor C complex GO:0004003 ATP-dependent DNA helicase activity GO:0003677 DNA binding GO:0016321 female meiosis chromosome segregation GO:0007067 mitosis GO:0005634 nucleus GO:0000077 DNA damage checkpoint GO:0000076 DNA replication checkpoint GO:0005524 ATP binding GO:0003689 DNA clamp loader activity GO:0005875 microtubule associated complex |
| InterPro families | IPR003593 ATPase, AAA+ type, core IPR013748 Replication factor C IPR003959 ATPase, AAA-type, core IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal |
| Orthology group | MCL13780 |
Nucleotide sequence:
ATGAGTGACGACGACGTTACTATAATGGAAGTTGACGAGGTAGATCCTAAGCCCAGCAAG
TCGGTAACAGTTCAAAGTAAAGTTACTTCACATTTACCCTGGATAGAAAAATACAGACCG
CAGACATTTACTGATATAGTGGGCAACGAGGACACGGTGTCACGTCTGGCGGTGTTTGCT
CGTACTGGCAACGCACCTAATATAATAATAGCGGGACCGCCCGGTGTAGGTAAAACCACA
ACAATCCTGTGTTTAGCTCGCGTACTTCTCGGTCCCGCTTTCAAAGATGCTGTTCTTGAA
TTAAACGCATCAAATGATCGAGGTATCGATGTTGTCCGTAATAAAATCAAAATGTTTGCT
CAACAGAAGGTGACATTACCTCCTGGAAGACATAAAATAGTTATTTTGGATGAGGCTGAC
AGCATGACGGATGGCGCCCAGCAGGCTCTGAGGCGTACCATGGAACTTTATTCCAGCACC
ACGCGCTTTGCTCTAGCAGCTAACAACAGTGAGAAGATTATTGAACCAATCCAGTCTCGT
TGTGCTGTTTTACGCTATACCAAACTGAGCGATGCCCAGATACTAGCTAAGGTTATTGAA
GTCTGTGAAAAAGAAGACTTATCCTACACAGAGGAAGGAGTTAATGCTGTTGTTTTCACC
GCCCAGGGAGACTTGAGAGCCGCACTAAATAACCTGCAGTCCACAGCACAGGGCTTTGCC
CATGTCAGTCCTGATAATGTGTTCAAGGTGTGCGATGAACCGCACCCTATGCTCGTAAAG
ACGATGTTAGAGGCCTGCACAAGAAAGGATATTTATGAAGCTTATAAGGTTATAGCAAAG
CTTTGTCGTCTCGGTTATGCTACAGAGGATATATTGAGTAACATGTTCCGTGTGAGCAAG
ACTCTGTCTGTGTCGGAAGATGTACGTCTAGGGCTGATCAAACAGATCGGACTCACACAG
ATGAGGGCGGCAGACGGGCTCACTTCACAGCTACAACTGGCAGCCCTACTGGCAAGGATG
TGTGGAGGGAAGGGGGTGGATGAAGAGTAA
Protein sequence:
MSDDDVTIMEVDEVDPKPSKSVTVQSKVTSHLPWIEKYRPQTFTDIVGNEDTVSRLAVFA
RTGNAPNIIIAGPPGVGKTTTILCLARVLLGPAFKDAVLELNASNDRGIDVVRNKIKMFA
QQKVTLPPGRHKIVILDEADSMTDGAQQALRRTMELYSSTTRFALAANNSEKIIEPIQSR
CAVLRYTKLSDAQILAKVIEVCEKEDLSYTEEGVNAVVFTAQGDLRAALNNLQSTAQGFA
HVSPDNVFKVCDEPHPMLVKTMLEACTRKDIYEAYKVIAKLCRLGYATEDILSNMFRVSK
TLSVSEDVRLGLIKQIGLTQMRAADGLTSQLQLAALLARMCGGKGVDEE