| New model in OGS2.0 | DPOGS210135 |
|---|---|
| Genomic Position | scaffold978:- 42705-47293 |
| See gene structure | |
| CDS Length | 3111 |
| Paired RNAseq reads | 4674 |
| Single RNAseq reads | 13441 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA003759 (0.0) |
| Best Drosophila hit | Spt5 (0.0) |
| Best Human hit | transcription elongation factor SPT5 isoform b (0.0) |
| Best NR hit (blastp) | PREDICTED: similar to GA20489-PA [Nasonia vitripennis] (0.0) |
| Best NR hit (blastx) | GK15869 [Drosophila willistoni] (0.0) |
| GeneOntology terms | GO:0005634 nucleus GO:0003711 transcription elongation regulator activity GO:0006350 transcription GO:0005703 polytene chromosome puff GO:0005705 polytene chromosome interband GO:0000176 nuclear exosome (RNase complex) GO:0032968 positive regulation of RNA elongation from RNA polymerase II promoter GO:0007052 mitotic spindle organization |
| InterPro families | IPR006645 Transcription antitermination protein, NusG, N-terminal IPR005824 KOW IPR014723 Ribosomal protein L24, SH3-like IPR005100 Transcription elongation factor Spt5, NGN domain IPR022581 Spt5 transcription elongation factor, N-terminal IPR008991 Translation protein SH3-like IPR017071 Transcription elongation factor Spt5 |
| Orthology group | MCL11767 |
Nucleotide sequence:
ATGTCGGACTCGGAGGGCAGTAATTACTCCGGGAGTGGCTCGGACGCAGGTAGTGTTGTG
TCTAATCGGTCCAGACGCAGCGCTGCATCAAATCGCTCTGCTAAGTCCAGGTCACGTTCT
CGCTCACGATCCAGAAGCCGTTCCGCTGGTTCCGATGGCAGCCGAAACAGGGATGATGAG
GCTAAGGAGGCTTCTGGTGATGAAGAAGTTGAGGATGAGCAAGAGCCCGAAGGGGAGGAC
CTGGTGGACTCGGAAGAGTATGATGAGGACGAGGAAGAGGAACGACGTAGGAAGAAGAGG
AAGAAGGACAGTCGCTACGGAGGATTCATTATAGATGAGGCTGAGGTAGATGATGAAGTC
GATGAAGACGATGAGTGGGAGGAAGGCGCCCAGGAAATGGGTATCGTCGGTAATGAGGTG
GATGAGATCGGACCCACAGCCAGAGAAATAGAGGGCCGACGCAGAGGAACCAATCTGTGG
GACTCACAGAAAGAAGAAGAAATAGAGGAATACTTGAGAAATAAATATGCTGATGAATCA
GCGGCGCTCAGACACTTTGGTGAGGGCGGTGAAGAAATGTCTGATGAGATCACTCAACAG
ACCTTGCTGCCCGGCATCAAGGATCCTAACCTGTGGATGGTGAAATGCAGGATCGGTGAA
GAGAAGGCGACTGTGTTATTGCTTATGAGAAAATTTATTACCTACCAGAATTCAGAGGAA
CCTTTCCAAATAAAGTCGGTGGTGGCTCCGGAAGGAGTCAAGGGCTTCATCTACATTGAG
GCATACAAACAGACACATGTGAAAGCCATCATAGACAAAGTGGGTAATTTGAGAATGGGC
ACATGGAAACAGGAGATGGTACCCATCAAGGAAATGACAGATGTTTTGAGGGTTGTTAAG
GAACAGTCAGGTTTAAAACCGAAACAGTGGGTGCGACTCAAGCGAGGCCTCTATAAAGAC
GATATAGCTCAAGTAGATTACGTAGATTTAGCACAAAACCAAGTTCACCTGAAACTTCTT
CCTAGAATAGACTACACAAGACTCAGAGGAGCTCTAAGGACCGTGCAGAGCGAGAGCGAA
GCGGCCAAAAGGAAAAAAAAGCGGCGACCTGCGGCCAAACCTTTCGACCCCGAAGCTATT
CGCGCCATCGGCGGCGAAGTGACTTCGGACGGTGACTTCCTCATATTTGAGGGAAACAGA
TACTCCAGAAAGGGTTTCCTGTACAAGAACTTCACCATGTCCGCGATATTGGCGGAGGGC
GTCAAACCCACGCTCACGGAACTAGAAAGATTCGAAGAGCAACCGGAAGGTATAGACATC
GAGCTGGCGGCGCCCGCCAAGGACGACCCCACTAGTCTGCACTCGTTCTCGATGGGAGAT
AACGTGGAGGTGTGTTCCGGTGATCTGGCCAACCTGCAGGCCAGGATCATAGCCATAGAT
GGCTCCATGATCACCGTCATGCCGAGACACGACGCTCTGAAGGATCCGCTCGTATTCAAA
CCCAACGAACTACGGAAGTACTTCAAACAGGGAGACCACGTGAAAGTCTTAGCGGGAAGA
TACGAGGGCGACACCGGTCTCATCGTCCGAGTGGAACCTCACAGGGCGGTCCTCGTGTCG
GATGTGACGATGCACGAGCTGGAGGTGTTGCCCAGAGACCTGCAGCTGTGTTCGGACATG
GCGACCGGCGTGGACTCGCTGGGACAGTTCCAGTGGGGGGACATGGTGCTGCTGGACTCG
CAGACGGTCGGCGTCATCGTCCGACTCGAGAGGGAGAACTTCCACGTGCTCGGCATGCAG
GGGAAGGTGATCGAGTGCAAACCTCAGGCGCTGCAGAAGAGAAGGGAGAACAGGTTCACC
ATGGCGCTCGACTCCGAGCACAACTCCATACAAAAGAAAGACATCGTCAAGGTCATCGAC
GGACCGCACGCGGGCCGCGAGGGAGAGATAAAGCATCTGTACAGAAACTTCGCCTTCCTG
CAGTCGAGGATGTACCCCGACAACGGAGGAATCTTTGTGTGCAAGACGAGACACCTGCAG
CTGGCGGGAGGCGCCAAGAACGCCGCCGCCAGCAACGGACTCGCTCTCGCGTTCATGTCG
CCGAGGATACAGTCACCCATGCACCCGTCGGGCAGGGGAGGGGGCCGGGGCCGCGGCCGG
GGAGGGAGGGGGGCTGTCGCCAGGGACAGGGAGCTCATAGGACAGACCATCAATAGAGAC
GCCACGGGCAGCACCGCGCGCGTGGAGCTGCACACCATGTGTCAGACCATCTCCGTGGAC
CGCGGACACATCGCGGCGGCCGGCGGCCCCAACGGCATCGCCCGCGGGGGAGCCTCCAGT
TATGGCCGCACCCCCATGCGGGCGGGCGCGCACACGCCGACTTACCGCGAGGCGGGGCTG
AAGACGCCGCTCCAGGGCAACGCAACGCCGATCTACGAGGCGGGAGCTCGCACGCCTCAC
TACGGGTCCAGCACGCCGGCGCACGAGGGCGGCAGGACACCGGCCCACCCCGCCTGGGAC
GCCGCCGCCCACACGCCGCGTCCCGACCACGATCTGCTGCTGGCGTCCGCCTCTCCTCCG
CCCGCCGCCTCCTCCTCGCACTACGACGCCGCCTACCAGCAGGGGCCCTTCACGCCGCAG
ACGCCGGGCACCATGTACGGCTCCGATCACACCTACAGCCCGTACCGACCCAGCCCGAGC
CCCGGCACTTACGCCGGCTACCTGGCCACACCCAGCCCGGCGCCCTACTCGCCCCGCTCG
CCCTACACGGCCGAGGACGCCGACGACTGGCACGCGCCCGACCTGGAGGTACGCGTGCGG
GGCGGAGCGGAGCCGGGCCTGCGGGGGCAGGCGGGAGCGCTGCGGAGCGTGTCGGGCGCC
ACGTGCGCCGTGTACCTGCCGCTGGAGGACCGCGTGCTCAACCTGCCCGCGCACCTGCTG
GAGCCCGTGGTGCCTCACAGCGGGGACCGGGTCAAGGTGATCGCGGGCGAGGACCGGGAG
GCGGTCGGCCAGCTCATCTCCATCGAGAACCAGGAGGGGGTCGTGAAGTTCGGCTCCGAC
GACATCAAGATCATGCAGCTGAGACATCTCTGCAAGATGGCCTCCAACTGA
Protein sequence:
MSDSEGSNYSGSGSDAGSVVSNRSRRSAASNRSAKSRSRSRSRSRSRSAGSDGSRNRDDE
AKEASGDEEVEDEQEPEGEDLVDSEEYDEDEEEERRRKKRKKDSRYGGFIIDEAEVDDEV
DEDDEWEEGAQEMGIVGNEVDEIGPTAREIEGRRRGTNLWDSQKEEEIEEYLRNKYADES
AALRHFGEGGEEMSDEITQQTLLPGIKDPNLWMVKCRIGEEKATVLLLMRKFITYQNSEE
PFQIKSVVAPEGVKGFIYIEAYKQTHVKAIIDKVGNLRMGTWKQEMVPIKEMTDVLRVVK
EQSGLKPKQWVRLKRGLYKDDIAQVDYVDLAQNQVHLKLLPRIDYTRLRGALRTVQSESE
AAKRKKKRRPAAKPFDPEAIRAIGGEVTSDGDFLIFEGNRYSRKGFLYKNFTMSAILAEG
VKPTLTELERFEEQPEGIDIELAAPAKDDPTSLHSFSMGDNVEVCSGDLANLQARIIAID
GSMITVMPRHDALKDPLVFKPNELRKYFKQGDHVKVLAGRYEGDTGLIVRVEPHRAVLVS
DVTMHELEVLPRDLQLCSDMATGVDSLGQFQWGDMVLLDSQTVGVIVRLERENFHVLGMQ
GKVIECKPQALQKRRENRFTMALDSEHNSIQKKDIVKVIDGPHAGREGEIKHLYRNFAFL
QSRMYPDNGGIFVCKTRHLQLAGGAKNAAASNGLALAFMSPRIQSPMHPSGRGGGRGRGR
GGRGAVARDRELIGQTINRDATGSTARVELHTMCQTISVDRGHIAAAGGPNGIARGGASS
YGRTPMRAGAHTPTYREAGLKTPLQGNATPIYEAGARTPHYGSSTPAHEGGRTPAHPAWD
AAAHTPRPDHDLLLASASPPPAASSSHYDAAYQQGPFTPQTPGTMYGSDHTYSPYRPSPS
PGTYAGYLATPSPAPYSPRSPYTAEDADDWHAPDLEVRVRGGAEPGLRGQAGALRSVSGA
TCAVYLPLEDRVLNLPAHLLEPVVPHSGDRVKVIAGEDREAVGQLISIENQEGVVKFGSD
DIKIMQLRHLCKMASN